Detailed information NTG0246905

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CMR26_RS14920
• Genome accession: NZ_CP023414
• Coordinates: 3007384..3008532 (-)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain BS-37
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3002384..3013532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CMR26_RS14890 (CMR26_14910)	-	3002523..3003281 (-)	759	WP_003156330.1	ABC transporter ATP-binding protein	-
CMR26_RS14895 (CMR26_14915)	-	3003275..3004222 (-)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
CMR26_RS14900 (CMR26_14920)	ceuB	3004212..3005165 (-)	954	WP_015239156.1	ABC transporter permease	Machinery gene
CMR26_RS14905 (CMR26_14925)	-	3005579..3006943 (+)	1365	WP_020955323.1	aspartate kinase	-
CMR26_RS14910 (CMR26_14930)	-	3007023..3007133 (+)	111	WP_369878517.1	YjcZ family sporulation protein	-
CMR26_RS14915 (CMR26_14935)	phrC	3007281..3007400 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CMR26_RS14920 (CMR26_14940)	rapC	3007384..3008532 (-)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
CMR26_RS14925 (CMR26_14945)	-	3008685..3010118 (-)	1434	WP_162183162.1	sensor histidine kinase	-
CMR26_RS14930 (CMR26_14950)	-	3010105..3010788 (-)	684	WP_042634825.1	response regulator transcription factor	-
CMR26_RS14935 (CMR26_14955)	-	3011001..3012413 (+)	1413	WP_108725166.1	ABC transporter permease	-
CMR26_RS14940 (CMR26_14960)	-	3012428..3013111 (+)	684	WP_108725167.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=246905 CMR26_RS14920 WP_007410270.1 3007384..3008532(-) (rapC) [Bacillus velezensis strain BS-37]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=246905 CMR26_RS14920 WP_007410270.1 3007384..3008532(-) (rapC) [Bacillus velezensis strain BS-37]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568