Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CMR26_RS08240 Genome accession   NZ_CP023414
Coordinates   1694681..1695931 (-) Length   416 a.a.
NCBI ID   WP_007409822.1    Uniprot ID   A7Z4W4
Organism   Bacillus velezensis strain BS-37     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1689681..1700931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS08225 (CMR26_08230) rny 1690266..1691825 (-) 1560 WP_003154140.1 ribonuclease Y -
  CMR26_RS08230 (CMR26_08235) - 1692118..1693299 (-) 1182 WP_007409824.1 serine hydrolase domain-containing protein -
  CMR26_RS08235 (CMR26_08240) recA 1693467..1694510 (-) 1044 WP_003154145.1 recombinase RecA Machinery gene
  CMR26_RS08240 (CMR26_08245) cinA 1694681..1695931 (-) 1251 WP_007409822.1 competence/damage-inducible protein A Machinery gene
  CMR26_RS08245 (CMR26_08250) pgsA 1695949..1696530 (-) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CMR26_RS08250 (CMR26_08255) - 1696603..1697499 (-) 897 WP_007409820.1 helix-turn-helix domain-containing protein -
  CMR26_RS08255 (CMR26_08260) - 1697518..1698309 (-) 792 WP_007409819.1 DUF3388 domain-containing protein -
  CMR26_RS08260 (CMR26_08265) - 1698437..1698694 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  CMR26_RS08265 (CMR26_08270) ymfI 1698770..1699498 (-) 729 WP_038463882.1 elongation factor P 5-aminopentanone reductase -
  CMR26_RS08270 (CMR26_08275) yfmH 1699558..1700844 (-) 1287 WP_108724969.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45012.28 Da        Isoelectric Point: 5.1492

>NTDB_id=246880 CMR26_RS08240 WP_007409822.1 1694681..1695931(-) (cinA) [Bacillus velezensis strain BS-37]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=246880 CMR26_RS08240 WP_007409822.1 1694681..1695931(-) (cinA) [Bacillus velezensis strain BS-37]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CCCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGGATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment