Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   Bateq7PJ16_RS20515 Genome accession   NZ_CP023409
Coordinates   3834813..3834932 (+) Length   39 a.a.
NCBI ID   WP_159377121.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829813..3839932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS20490 (Bateq7PJ16_4087) albG 3829977..3830678 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  Bateq7PJ16_RS20495 (Bateq7PJ16_4088) ywhL 3830684..3832060 (-) 1377 WP_014481223.1 YncE family protein -
  Bateq7PJ16_RS20500 (Bateq7PJ16_4089) ywhK 3832099..3833454 (-) 1356 WP_049140945.1 YncE family protein -
  Bateq7PJ16_RS22835 - 3833451..3833681 (-) 231 Protein_4021 hypothetical protein -
  Bateq7PJ16_RS20510 (Bateq7PJ16_4091) rapF 3833684..3834829 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  Bateq7PJ16_RS20515 phrF 3834813..3834932 (+) 120 WP_159377121.1 phosphatase RapF inhibitor PhrF Regulator
  Bateq7PJ16_RS20520 ywhH 3835030..3835503 (+) 474 Protein_4024 YbaK/EbsC family protein -
  Bateq7PJ16_RS20525 (Bateq7PJ16_4094) speB 3835534..3836406 (-) 873 WP_003227545.1 agmatinase -
  Bateq7PJ16_RS20530 (Bateq7PJ16_4095) speE 3836467..3837297 (-) 831 WP_003227543.1 spermidine synthase -
  Bateq7PJ16_RS20535 (Bateq7PJ16_4096) pbpG 3837499..3839574 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4200.04 Da        Isoelectric Point: 10.4997

>NTDB_id=246829 Bateq7PJ16_RS20515 WP_159377121.1 3834813..3834932(+) (phrF) [Bacillus subtilis strain 7PJ-16]
MKLKSKLLLSCLALSTVFVATTIANAPTHQNEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=246829 Bateq7PJ16_RS20515 WP_159377121.1 3834813..3834932(+) (phrF) [Bacillus subtilis strain 7PJ-16]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAAATGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment