Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   Bateq7PJ16_RS20510 Genome accession   NZ_CP023409
Coordinates   3833684..3834829 (+) Length   381 a.a.
NCBI ID   WP_021480843.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3828684..3839829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS20485 (Bateq7PJ16_4086) albF 3828700..3829980 (+) 1281 WP_069964371.1 pitrilysin family protein -
  Bateq7PJ16_RS20490 (Bateq7PJ16_4087) albG 3829977..3830678 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  Bateq7PJ16_RS20495 (Bateq7PJ16_4088) ywhL 3830684..3832060 (-) 1377 WP_014481223.1 YncE family protein -
  Bateq7PJ16_RS20500 (Bateq7PJ16_4089) ywhK 3832099..3833454 (-) 1356 WP_049140945.1 YncE family protein -
  Bateq7PJ16_RS22835 - 3833451..3833681 (-) 231 Protein_4021 hypothetical protein -
  Bateq7PJ16_RS20510 (Bateq7PJ16_4091) rapF 3833684..3834829 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  Bateq7PJ16_RS20515 phrF 3834813..3834932 (+) 120 WP_159377121.1 phosphatase RapF inhibitor PhrF Regulator
  Bateq7PJ16_RS20520 ywhH 3835030..3835503 (+) 474 Protein_4024 YbaK/EbsC family protein -
  Bateq7PJ16_RS20525 (Bateq7PJ16_4094) speB 3835534..3836406 (-) 873 WP_003227545.1 agmatinase -
  Bateq7PJ16_RS20530 (Bateq7PJ16_4095) speE 3836467..3837297 (-) 831 WP_003227543.1 spermidine synthase -
  Bateq7PJ16_RS20535 (Bateq7PJ16_4096) pbpG 3837499..3839574 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45603.10 Da        Isoelectric Point: 5.1493

>NTDB_id=246828 Bateq7PJ16_RS20510 WP_021480843.1 3833684..3834829(+) (rapF) [Bacillus subtilis strain 7PJ-16]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFNFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=246828 Bateq7PJ16_RS20510 WP_021480843.1 3833684..3834829(+) (rapF) [Bacillus subtilis strain 7PJ-16]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTATGAGCTGGACCAACGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTAATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

99.213

100

0.992
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment