Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Bateq7PJ16_RS13825 Genome accession   NZ_CP023409
Coordinates   2555362..2556432 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain 7PJ-16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550362..2561432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS13780 (Bateq7PJ16_2732) tapA 2550842..2551603 (-) 762 WP_064671037.1 amyloid fiber anchoring/assembly protein TapA -
  Bateq7PJ16_RS13785 (Bateq7PJ16_2733) yqzG 2551873..2552199 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  Bateq7PJ16_RS13790 (Bateq7PJ16_2734) spoIITA 2552241..2552420 (-) 180 WP_014480252.1 YqzE family protein -
  Bateq7PJ16_RS13795 (Bateq7PJ16_2735) comGG 2552492..2552866 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  Bateq7PJ16_RS13800 (Bateq7PJ16_2736) comGF 2552867..2553250 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  Bateq7PJ16_RS13805 (Bateq7PJ16_2737) comGE 2553276..2553623 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  Bateq7PJ16_RS13810 (Bateq7PJ16_2738) comGD 2553607..2554038 (-) 432 WP_032726159.1 competence type IV pilus minor pilin ComGD Machinery gene
  Bateq7PJ16_RS13815 (Bateq7PJ16_2739) comGC 2554028..2554324 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  Bateq7PJ16_RS13820 (Bateq7PJ16_2740) comGB 2554338..2555375 (-) 1038 WP_086344083.1 comG operon protein ComGB Machinery gene
  Bateq7PJ16_RS13825 (Bateq7PJ16_2741) comGA 2555362..2556432 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  Bateq7PJ16_RS13830 (Bateq7PJ16_2743) corA 2556836..2557789 (-) 954 WP_015483432.1 magnesium transporter CorA -
  Bateq7PJ16_RS13835 (Bateq7PJ16_2744) yqhB 2557932..2559260 (+) 1329 WP_159376957.1 hemolysin family protein -
  Bateq7PJ16_RS13840 (Bateq7PJ16_2745) rsbRD 2559313..2560149 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  Bateq7PJ16_RS13850 (Bateq7PJ16_2746) mgsR 2560373..2560753 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  Bateq7PJ16_RS13855 (Bateq7PJ16_2747) yqgY 2560985..2561230 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=246802 Bateq7PJ16_RS13825 WP_004399124.1 2555362..2556432(-) (comGA) [Bacillus subtilis strain 7PJ-16]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=246802 Bateq7PJ16_RS13825 WP_004399124.1 2555362..2556432(-) (comGA) [Bacillus subtilis strain 7PJ-16]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCTGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCCATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment