Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY77_RS18505 Genome accession   NZ_CP028751
Coordinates   3826649..3827164 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain A24     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3821649..3832164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY77_RS18480 (AOY77_19705) ygaZ 3822048..3822785 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AOY77_RS18485 (AOY77_19710) ygaH 3822775..3823110 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AOY77_RS18490 (AOY77_19715) emrR 3823201..3823731 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY77_RS18495 (AOY77_19720) emrA 3823858..3825030 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY77_RS18500 (AOY77_19725) emrB 3825047..3826585 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY77_RS18505 (AOY77_19730) luxS 3826649..3827164 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  AOY77_RS18510 (AOY77_19735) gshA 3827314..3828870 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY77_RS18515 (AOY77_19740) yqaA 3828943..3829371 (-) 429 WP_001287454.1 YqaA family protein -
  AOY77_RS18520 (AOY77_19745) yqaB 3829368..3829934 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY77_RS18550 (AOY77_19775) csrA 3830989..3831174 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=246801 AOY77_RS18505 WP_001130208.1 3826649..3827164(-) (luxS) [Escherichia coli strain A24]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=246801 AOY77_RS18505 WP_001130208.1 3826649..3827164(-) (luxS) [Escherichia coli strain A24]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment