Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Bateq7PJ16_RS13765 Genome accession   NZ_CP023409
Coordinates   2549009..2549344 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 7PJ-16     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2544009..2554344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS13745 (Bateq7PJ16_2725) gcvT 2544600..2545688 (-) 1089 WP_038829737.1 glycine cleavage system aminomethyltransferase GcvT -
  Bateq7PJ16_RS13750 (Bateq7PJ16_2726) hepAA 2546130..2547803 (+) 1674 WP_038829735.1 SNF2-related protein -
  Bateq7PJ16_RS13755 (Bateq7PJ16_2727) yqhG 2547824..2548618 (+) 795 WP_032726154.1 YqhG family protein -
  Bateq7PJ16_RS13760 (Bateq7PJ16_2728) sinI 2548802..2548975 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  Bateq7PJ16_RS13765 (Bateq7PJ16_2729) sinR 2549009..2549344 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  Bateq7PJ16_RS13770 (Bateq7PJ16_2730) tasA 2549436..2550221 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  Bateq7PJ16_RS13775 (Bateq7PJ16_2731) sipW 2550286..2550858 (-) 573 WP_003246088.1 signal peptidase I SipW -
  Bateq7PJ16_RS13780 (Bateq7PJ16_2732) tapA 2550842..2551603 (-) 762 WP_064671037.1 amyloid fiber anchoring/assembly protein TapA -
  Bateq7PJ16_RS13785 (Bateq7PJ16_2733) yqzG 2551873..2552199 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  Bateq7PJ16_RS13790 (Bateq7PJ16_2734) spoIITA 2552241..2552420 (-) 180 WP_014480252.1 YqzE family protein -
  Bateq7PJ16_RS13795 (Bateq7PJ16_2735) comGG 2552492..2552866 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  Bateq7PJ16_RS13800 (Bateq7PJ16_2736) comGF 2552867..2553250 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  Bateq7PJ16_RS13805 (Bateq7PJ16_2737) comGE 2553276..2553623 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  Bateq7PJ16_RS13810 (Bateq7PJ16_2738) comGD 2553607..2554038 (-) 432 WP_032726159.1 competence type IV pilus minor pilin ComGD Machinery gene
  Bateq7PJ16_RS13815 (Bateq7PJ16_2739) comGC 2554028..2554324 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=246795 Bateq7PJ16_RS13765 WP_003226345.1 2549009..2549344(+) (sinR) [Bacillus subtilis strain 7PJ-16]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=246795 Bateq7PJ16_RS13765 WP_003226345.1 2549009..2549344(+) (sinR) [Bacillus subtilis strain 7PJ-16]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment