Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY79_RS05855 Genome accession   NZ_CP028749
Coordinates   1208700..1209437 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A26     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203700..1214437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY79_RS05825 (AOY79_06140) yfiL 1203858..1204223 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  AOY79_RS05830 (AOY79_06145) aroF 1204434..1205504 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY79_RS05835 (AOY79_06150) tyrA 1205515..1206636 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY79_RS05840 (AOY79_06155) pheA 1206679..1207839 (-) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY79_RS05845 (AOY79_06160) pheL 1207938..1207985 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY79_RS05850 (AOY79_06165) raiA 1208089..1208430 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY79_RS05855 (AOY79_06175) comL 1208700..1209437 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY79_RS05860 (AOY79_06180) rluD 1209572..1210552 (+) 981 WP_000079118.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY79_RS05865 (AOY79_06185) yfiH 1210549..1211280 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  AOY79_RS05870 (AOY79_06190) clpC 1211410..1213983 (+) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=246606 AOY79_RS05855 WP_000197686.1 1208700..1209437(-) (comL) [Escherichia coli strain A26]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=246606 AOY79_RS05855 WP_000197686.1 1208700..1209437(-) (comL) [Escherichia coli strain A26]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment