Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CMV25_RS06760 Genome accession   NZ_CP023392
Coordinates   1351476..1353248 (+) Length   590 a.a.
NCBI ID   WP_096039974.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346476..1358248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS11495 - 1348140..1349366 (+) 1227 WP_167372307.1 substrate-binding domain-containing protein -
  CMV25_RS06750 (CMV25_06750) - 1349609..1350799 (+) 1191 WP_096039972.1 iron-containing alcohol dehydrogenase -
  CMV25_RS06755 (CMV25_06755) - 1350950..1351405 (+) 456 WP_096039973.1 MarR family winged helix-turn-helix transcriptional regulator -
  CMV25_RS06760 (CMV25_06760) rcrP 1351476..1353248 (+) 1773 WP_096039974.1 ABC transporter ATP-binding protein Regulator
  CMV25_RS06765 (CMV25_06765) rcrQ 1353248..1355113 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  CMV25_RS06770 (CMV25_06770) - 1355249..1355995 (+) 747 WP_157738514.1 tyrosine-protein phosphatase -
  CMV25_RS06775 (CMV25_06775) - 1356269..1356676 (+) 408 WP_096039976.1 hypothetical protein -
  CMV25_RS06780 (CMV25_06780) - 1356741..1357097 (+) 357 WP_061773765.1 hypothetical protein -
  CMV25_RS06785 (CMV25_06785) - 1357123..1357488 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64916.51 Da        Isoelectric Point: 9.2489

>NTDB_id=246606 CMV25_RS06760 WP_096039974.1 1351476..1353248(+) (rcrP) [Lactococcus raffinolactis strain WiKim0068]
MFKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGKKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=246606 CMV25_RS06760 WP_096039974.1 1351476..1353248(+) (rcrP) [Lactococcus raffinolactis strain WiKim0068]
ATGTTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCCTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTGATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCAACCAACGACATTACCCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCTCCGATCACTGCCGTTTGGGCCATCATGAAAATTGCCAACAAATCATGGGAATGGACGACCGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTTATGATCAGTATTATCGTGACGCTTGCCATGCCTCGTTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACCGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCTATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATTGATACCGCCTCAAGCATTAAAAACGGGAAAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGCTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGATAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-268)

ABC transporter (ABC_tran)

(361-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.698

100

0.553

Multiple sequence alignment