Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CMV25_RS06765 Genome accession   NZ_CP023392
Coordinates   1353248..1355113 (+) Length   621 a.a.
NCBI ID   WP_061773762.1    Uniprot ID   A0AAE6YKC1
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348248..1360113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS06750 (CMV25_06750) - 1349609..1350799 (+) 1191 WP_096039972.1 iron-containing alcohol dehydrogenase -
  CMV25_RS06755 (CMV25_06755) - 1350950..1351405 (+) 456 WP_096039973.1 MarR family winged helix-turn-helix transcriptional regulator -
  CMV25_RS06760 (CMV25_06760) rcrP 1351476..1353248 (+) 1773 WP_096039974.1 ABC transporter ATP-binding protein Regulator
  CMV25_RS06765 (CMV25_06765) rcrQ 1353248..1355113 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  CMV25_RS06770 (CMV25_06770) - 1355249..1355995 (+) 747 WP_157738514.1 tyrosine-protein phosphatase -
  CMV25_RS06775 (CMV25_06775) - 1356269..1356676 (+) 408 WP_096039976.1 hypothetical protein -
  CMV25_RS06780 (CMV25_06780) - 1356741..1357097 (+) 357 WP_061773765.1 hypothetical protein -
  CMV25_RS06785 (CMV25_06785) - 1357123..1357488 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67574.84 Da        Isoelectric Point: 5.7384

>NTDB_id=246607 CMV25_RS06765 WP_061773762.1 1353248..1355113(+) (rcrQ) [Lactococcus raffinolactis strain WiKim0068]
MPTTKNTPKKSNGGGFGPGRGLGRGGEKPKDVKKALGDLAKYVKPWYPAILVAAIAACGGAYLTIIGPDRLSEITNKIMA
GLRASFIPKGMPGHGDIDMKAITAIGVTLIAFYLGSALLSYTQGFIMATVTQRTSKKLRQDISTKINKLPLRYFDSHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGTIIMMFKTNVEMSLTAIATTAIGFGLMMLIMTKSQRFFNAQQNGLGE
VNGFVEEVYTGHNIVRVSNADKSKQDEFDEINERLYNSVWKSQFLSGLMMPLMQFIGNFGYGAVCLVGAILAIDGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSMQSAGAASERIFTFLAEPELEDETGKATTLVNPKGAVEFKNVHFGYNADRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDIDSGQIIIDGTPIKEVTREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
CDITDEQVVAAAKAVGVDHFINTLPNGYDSVLKDADELSVGERQLLTIARALLKNAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGNHEALLAQGGFYADLYNSQFESVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=246607 CMV25_RS06765 WP_061773762.1 1353248..1355113(+) (rcrQ) [Lactococcus raffinolactis strain WiKim0068]
ATGCCGACAACAAAAAATACACCTAAAAAATCTAATGGCGGTGGCTTTGGACCAGGTCGTGGCTTAGGTCGCGGAGGTGA
AAAACCCAAAGACGTCAAAAAAGCCTTGGGCGACTTAGCGAAATATGTCAAACCTTGGTATCCGGCGATTCTTGTCGCAG
CCATCGCTGCCTGTGGTGGTGCTTATCTGACCATTATCGGTCCTGATCGCCTATCTGAAATTACTAATAAAATCATGGCT
GGTTTGAGAGCCAGCTTCATCCCCAAAGGCATGCCAGGTCATGGCGACATTGATATGAAAGCCATTACGGCGATTGGTGT
GACTTTGATTGCCTTCTACTTGGGTTCAGCGCTTTTGAGTTACACCCAAGGTTTCATCATGGCGACTGTAACCCAACGGA
CATCTAAGAAACTACGTCAAGATATTTCGACGAAAATTAACAAATTACCTTTGCGCTACTTTGATAGTCATCCTTATGGC
GATACTTTGTCGCGCGTGACAAATGACGTGGATGCGATCAGCCAAGCCCTTAACCAATCCGTTGGGAGTTTGGTTTCAGC
CTTGACGCTCTTCTTTGGCACGATCATCATGATGTTTAAAACCAACGTTGAAATGAGTCTGACTGCTATTGCCACAACGG
CGATCGGCTTTGGCTTAATGATGCTCATCATGACTAAGTCACAAAGATTCTTTAACGCCCAACAAAACGGCCTCGGCGAG
GTTAATGGTTTTGTGGAAGAAGTTTACACGGGTCATAATATCGTGAGAGTGTCCAATGCGGACAAGTCTAAACAAGATGA
GTTCGATGAAATCAATGAACGCCTTTATAACTCAGTTTGGAAATCTCAATTTCTGTCAGGCTTGATGATGCCACTCATGC
AATTCATCGGTAACTTTGGTTACGGTGCTGTCTGTTTGGTTGGGGCGATTTTAGCCATCGATGGTAAAATCGAGTTTGGC
GTTATCGTAGCCTTCATGATTTATATTCGTTTGTTCACCCAACCCTTGACACAAATCGCCCAAGCGGTGACCTCAATGCA
ATCAGCAGGCGCAGCTTCTGAGCGGATTTTCACATTCCTTGCGGAACCTGAATTAGAAGACGAAACGGGTAAGGCAACGA
CATTGGTCAACCCTAAAGGGGCTGTTGAATTTAAAAACGTTCATTTCGGCTATAACGCTGATCGTGTCATCATCAATGAC
TTCTCAGCCAAAGCTGAACCTGGTCAGAAGATTGCCATCGTTGGGCCTACGGGCGCTGGTAAATCAACCATGGTCAACTT
GCTCATGCGTTTCTACGATATTGATTCTGGTCAAATCATCATTGATGGGACACCGATTAAAGAGGTGACGCGTGAAGCGG
TCCACGATCAGTTTTCAATGGTCTTACAAGACACGTGGTTGTTTGAAGGGACAGTGAAAGAAAACTTGATCTATAATCAA
TGTGATATCACGGATGAACAGGTTGTTGCTGCTGCTAAGGCAGTTGGTGTCGATCATTTTATCAATACCTTACCAAATGG
CTATGACTCAGTCTTGAAAGACGCTGATGAATTATCAGTTGGTGAACGTCAGCTCTTAACCATTGCCCGTGCGCTCTTGA
AAAATGCACCAATGTTGATTCTTGATGAAGCGACATCATCAGTAGATACGCGGACTGAAGAATTGATCCAAAAAGCCATG
GATAAACTCATGGAAGGTCGGACAAGTTTTGTCATTGCCCACAGACTGTCTACCATCAAAAATGCTGACTTGATTCTCGT
CATGAAAGACGGCGATATCATCGAAAGTGGCAACCACGAAGCCTTGCTTGCACAAGGTGGCTTCTATGCTGATTTGTACA
ATTCACAGTTTGAAAGCGTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(399-546)

ABC transporter transmembrane region (ABC_membrane)

(82-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.508

95.008

0.575

Multiple sequence alignment