Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY82_RS02075 Genome accession   NZ_CP028746
Coordinates   453080..453712 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain A29     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 448080..458712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY82_RS02050 (AOY82_02195) yhfG 448212..448379 (+) 168 WP_000736860.1 YhfG family protein -
  AOY82_RS02055 (AOY82_02200) fic 448369..448971 (+) 603 WP_040090028.1 putative adenosine monophosphate-protein transferase Fic -
  AOY82_RS02060 (AOY82_02205) pabA 449003..449566 (+) 564 WP_201479621.1 aminodeoxychorismate synthase component 2 -
  AOY82_RS02065 (AOY82_02210) argD 449652..450872 (+) 1221 WP_000963787.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY82_RS02070 (AOY82_02215) yhfK 450939..453029 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AOY82_RS02075 (AOY82_02220) crp 453080..453712 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY82_RS02080 (AOY82_02230) yhfA 454014..454418 (+) 405 WP_001148908.1 OsmC family protein -
  AOY82_RS02085 (AOY82_02235) prkB 454473..455342 (-) 870 WP_001274680.1 phosphoribulokinase -
  AOY82_RS02090 (AOY82_02240) yheU 455396..455614 (-) 219 WP_000907085.1 YheU family protein -
  AOY82_RS02095 (AOY82_02245) yheT 455608..456632 (-) 1025 Protein_416 hydrolase -
  AOY82_RS02100 (AOY82_02250) yheS 456632..458545 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=246353 AOY82_RS02075 WP_000242755.1 453080..453712(-) (crp) [Escherichia coli strain A29]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=246353 AOY82_RS02075 WP_000242755.1 453080..453712(-) (crp) [Escherichia coli strain A29]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467