Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CBDB_RS07160 Genome accession   NC_007356
Coordinates   1364732..1365745 (+) Length   337 a.a.
NCBI ID   WP_011310041.1    Uniprot ID   A0A916KNE6
Organism   Dehalococcoides mccartyi CBDB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359732..1370745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBDB_RS07125 (cbdb_A1691) tatC 1360943..1361731 (-) 789 WP_011310034.1 twin-arginine translocase subunit TatC -
  CBDB_RS07130 (cbdb_A1693) - 1361728..1362018 (-) 291 WP_011310035.1 Sec-independent protein translocase subunit TatA/TatB -
  CBDB_RS07135 (cbdb_A1694) - 1362095..1362331 (-) 237 WP_011310036.1 twin-arginine translocase TatA/TatE family subunit -
  CBDB_RS07140 (cbdb_A1695) tatA 1362423..1362620 (-) 198 WP_011310037.1 twin-arginine translocase TatA/TatE family subunit -
  CBDB_RS07145 (cbdb_A1696) folP 1362868..1363716 (+) 849 WP_011310038.1 dihydropteroate synthase -
  CBDB_RS07150 (cbdb_A1698) folK 1363707..1364237 (+) 531 WP_011310039.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CBDB_RS07155 (cbdb_A1699) queD 1364237..1364608 (+) 372 WP_011310040.1 6-carboxytetrahydropterin synthase QueD -
  CBDB_RS07160 (cbdb_A1700) recA 1364732..1365745 (+) 1014 WP_011310041.1 recombinase RecA Machinery gene
  CBDB_RS07165 (cbdb_A1701) - 1365833..1366477 (+) 645 WP_011310042.1 regulatory protein RecX -
  CBDB_RS07170 (cbdb_A1702) rny 1366546..1368129 (+) 1584 WP_011310043.1 ribonuclease Y -
  CBDB_RS07175 (cbdb_A1703) - 1368141..1368911 (+) 771 WP_011310044.1 TIGR00282 family metallophosphoesterase -
  CBDB_RS07180 (cbdb_A1704) - 1368914..1369777 (+) 864 WP_011310045.1 PHP domain-containing protein -
  CBDB_RS07185 (cbdb_A1705) - 1369774..1370472 (+) 699 WP_011310046.1 glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36044.38 Da        Isoelectric Point: 6.2983

>NTDB_id=24635 CBDB_RS07160 WP_011310041.1 1364732..1365745(+) (recA) [Dehalococcoides mccartyi CBDB1]
MTTEKDKALELTVGIIEKRFGKGSIMKLSDPSFRQTVEFIPTSSLALDIALGVGGIPRGRVAEIFGPEGSGKTTLAQHII
AQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTGEEALGIAEELVRSAAIGVIVIDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTASIGQTRTAVVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAVGT
RVRAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVSSEVIRKAGAFFSYGDIRLGQGRESAKNYLAANPDLAQEIE
EKIRASAVTLCSIGDGD

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=24635 CBDB_RS07160 WP_011310041.1 1364732..1365745(+) (recA) [Dehalococcoides mccartyi CBDB1]
ATGACCACGGAAAAAGATAAGGCTCTGGAACTCACTGTAGGCATAATAGAAAAACGCTTTGGCAAGGGTTCAATAATGAA
GTTGAGCGACCCTTCCTTCCGGCAAACAGTTGAGTTCATTCCTACAAGTTCACTGGCACTTGATATTGCCCTGGGCGTTG
GCGGGATTCCCAGAGGCCGGGTAGCTGAAATATTCGGTCCTGAAGGCTCTGGCAAGACTACTCTTGCCCAACACATTATT
GCCCAGGCCCAAAAAATGGGTGAAAAAGCCGCCTATATAGACGTGGAACATGCCCTTGATCCTAAATACGCTTCAACCTG
CGGGGTTAATCTGGATGAGCTTTTAATATCTCAACCGGATACCGGCGAAGAAGCGCTTGGTATTGCCGAAGAGCTGGTGA
GAAGTGCTGCCATAGGTGTAATCGTGATTGACAGTGTGGCGGCGCTGGTACCCAAAGCTGAAATAGAAGGCGACATGGGT
GACTCACATGTAGGTTTGCAGGCCAGGCTTATGTCTCAGGCCCTGCGAAAATTGACCGCTTCCATCGGGCAAACCAGAAC
GGCCGTTGTCTTTATTAACCAGTTAAGAGAAAAGGTGGGTGTTATGTTCGGCAATCCCGAAGTCACCCCCGGCGGCCGGG
CGCTCAAGTTTTACAGTTCGGTGCGTATAGATCTAAGGCGCATAGAAACCATCAAGCAGGGTACCGTAGCTGTTGGTACA
CGCGTAAGAGCCAAAGTGGTAAAAAATAAGGTTGCTCCTCCTTTCAGGACAGCCGAATTTGATATCATGTTTGACTCCGG
TATCAGCCGCGAGGGCAACCTTATTGATTTAGGCGTAAGCAGTGAAGTTATAAGGAAAGCAGGGGCTTTCTTTTCCTATG
GTGACATTCGCCTGGGGCAAGGCAGAGAGAGCGCCAAAAACTATCTGGCGGCAAACCCGGATCTGGCGCAGGAAATTGAA
GAAAAAATACGTGCCTCAGCGGTCACCCTTTGCAGTATTGGCGATGGCGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

62.539

95.846

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

95.549

0.596
  recA Neisseria gonorrhoeae strain FA1090

60.308

96.439

0.582
  recA Neisseria gonorrhoeae MS11

60.308

96.439

0.582
  recA Neisseria gonorrhoeae MS11

60.308

96.439

0.582
  recA Streptococcus mitis SK321

59.692

96.439

0.576
  recA Streptococcus mitis NCTC 12261

59.692

96.439

0.576
  recA Streptococcus pyogenes NZ131

59.385

96.439

0.573
  recA Streptococcus pneumoniae R6

59.202

96.736

0.573
  recA Streptococcus pneumoniae Rx1

59.202

96.736

0.573
  recA Streptococcus pneumoniae D39

59.202

96.736

0.573
  recA Streptococcus pneumoniae TIGR4

59.202

96.736

0.573
  recA Glaesserella parasuis strain SC1401

59.443

95.846

0.57
  recA Pseudomonas stutzeri DSM 10701

59.077

96.439

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

96.142

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.41

97.033

0.567
  recA Ralstonia pseudosolanacearum GMI1000

61.812

91.691

0.567
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.642

96.142

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.104

97.033

0.564
  recA Vibrio cholerae strain A1552

58.642

96.142

0.564
  recA Streptococcus mutans UA159

58.154

96.439

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.187

97.033

0.555
  recA Helicobacter pylori strain NCTC11637

57.716

96.142

0.555
  recA Helicobacter pylori 26695

57.716

96.142

0.555
  recA Acinetobacter baylyi ADP1

55.723

98.516

0.549
  recA Acinetobacter baumannii D1279779

55.09

99.11

0.546

Multiple sequence alignment