Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY83_RS02295 Genome accession   NZ_CP028745
Coordinates   502133..502765 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain A30     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 497133..507765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY83_RS02270 (AOY83_02385) yhfG 497265..497432 (+) 168 WP_000736862.1 YhfG family protein -
  AOY83_RS02275 (AOY83_02390) fic 497422..498024 (+) 603 WP_240767649.1 putative adenosine monophosphate-protein transferase Fic -
  AOY83_RS02280 (AOY83_02395) pabA 498056..498619 (+) 564 WP_000601848.1 aminodeoxychorismate synthase component 2 -
  AOY83_RS02285 (AOY83_02400) argD 498705..499925 (+) 1221 WP_000963810.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY83_RS02290 (AOY83_02405) yhfK 499992..502082 (-) 2091 WP_033814712.1 YccS/YhfK family putative transporter -
  AOY83_RS02295 (AOY83_02410) crp 502133..502765 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY83_RS02300 (AOY83_02420) yhfA 503067..503471 (+) 405 WP_001148908.1 OsmC family protein -
  AOY83_RS02305 (AOY83_02425) prkB 503526..504395 (-) 870 WP_001274680.1 phosphoribulokinase -
  AOY83_RS02310 (AOY83_02430) yheU 504449..504667 (-) 219 WP_000907085.1 YheU family protein -
  AOY83_RS02315 (AOY83_02435) yheT 504661..505683 (-) 1023 WP_240767650.1 hydrolase -
  AOY83_RS02320 (AOY83_02440) yheS 505683..507596 (-) 1914 WP_240767651.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=246273 AOY83_RS02295 WP_000242755.1 502133..502765(-) (crp) [Escherichia coli strain A30]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=246273 AOY83_RS02295 WP_000242755.1 502133..502765(-) (crp) [Escherichia coli strain A30]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTAGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467