Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CMV18_RS12405 Genome accession   NZ_CP023341
Coordinates   2483545..2484324 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LG37     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2478545..2489324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV18_RS12375 (CMV18_12365) fliH 2478589..2479344 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  CMV18_RS12380 (CMV18_12370) fliG 2479337..2480353 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CMV18_RS12385 (CMV18_12375) fliF 2480366..2481976 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  CMV18_RS12390 (CMV18_12380) fliE 2482019..2482339 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CMV18_RS12395 (CMV18_12385) flgC 2482350..2482802 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  CMV18_RS12400 (CMV18_12390) flgB 2482802..2483191 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CMV18_RS12405 (CMV18_12395) codY 2483545..2484324 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CMV18_RS12410 (CMV18_12400) hslU 2484362..2485765 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  CMV18_RS12415 (CMV18_12405) hslV 2485782..2486327 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  CMV18_RS12420 (CMV18_12410) xerC 2486343..2487260 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  CMV18_RS12425 (CMV18_12415) trmFO 2487330..2488637 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=246167 CMV18_RS12405 WP_003154263.1 2483545..2484324(-) (codY) [Bacillus velezensis strain LG37]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=246167 CMV18_RS12405 WP_003154263.1 2483545..2484324(-) (codY) [Bacillus velezensis strain LG37]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment