Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY86_RS22150 Genome accession   NZ_CP028742
Coordinates   4548700..4549332 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain A33     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4543700..4554332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY86_RS22125 (AOY86_23395) yheS 4543869..4545782 (+) 1914 WP_240768401.1 ABC transporter ATP-binding protein -
  AOY86_RS22130 (AOY86_23400) yheT 4545782..4546804 (+) 1023 WP_000057391.1 hydrolase -
  AOY86_RS22135 (AOY86_23405) yheU 4546798..4547016 (+) 219 WP_000907085.1 YheU family protein -
  AOY86_RS22140 (AOY86_23410) prkB 4547070..4547939 (+) 870 WP_001274684.1 phosphoribulokinase -
  AOY86_RS22145 (AOY86_23415) yhfA 4547994..4548398 (-) 405 WP_001148908.1 OsmC family protein -
  AOY86_RS22150 (AOY86_23425) crp 4548700..4549332 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY86_RS22155 (AOY86_23430) yhfK 4549383..4551473 (+) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  AOY86_RS22160 (AOY86_23435) argD 4551551..4552771 (-) 1221 WP_000963799.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY86_RS22165 (AOY86_23440) pabA 4552857..4553420 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  AOY86_RS22170 (AOY86_23445) fic 4553452..4554054 (-) 603 WP_001280638.1 putative adenosine monophosphate-protein transferase Fic -
  AOY86_RS22175 (AOY86_23450) yhfG 4554044..4554211 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=246089 AOY86_RS22150 WP_000242755.1 4548700..4549332(+) (crp) [Escherichia coli strain A33]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=246089 AOY86_RS22150 WP_000242755.1 4548700..4549332(+) (crp) [Escherichia coli strain A33]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTCTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467