Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CEQ83_RS25000 Genome accession   NZ_CP023317
Coordinates   4871940..4872302 (-) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia megaterium strain A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4867683..4878670 4871940..4872302 within 0


Gene organization within MGE regions


Location: 4867683..4878670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ83_RS24990 (CEQ83_25125) - 4867683..4870313 (+) 2631 WP_028411999.1 DEAD/DEAH box helicase -
  CEQ83_RS24995 (CEQ83_25130) - 4870611..4871657 (+) 1047 WP_028411998.1 LysM peptidoglycan-binding domain-containing protein -
  CEQ83_RS25000 (CEQ83_25135) ssbB 4871940..4872302 (-) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  CEQ83_RS25005 (CEQ83_25140) - 4872399..4872836 (+) 438 WP_028411996.1 YwpF-like family protein -
  CEQ83_RS25010 (CEQ83_25145) - 4873360..4873782 (+) 423 WP_028411995.1 helix-turn-helix domain-containing protein -
  CEQ83_RS25015 (CEQ83_25150) fabZ 4873811..4874245 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CEQ83_RS25020 (CEQ83_25155) - 4874329..4875150 (-) 822 WP_028411994.1 flagellar hook-basal body protein -
  CEQ83_RS25025 (CEQ83_25160) - 4875174..4875998 (-) 825 WP_033580401.1 flagellar hook-basal body protein -
  CEQ83_RS25030 (CEQ83_25165) - 4876113..4877114 (-) 1002 WP_013059791.1 rod shape-determining protein -
  CEQ83_RS25035 (CEQ83_25170) spoIIID 4877301..4877564 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  CEQ83_RS25040 (CEQ83_25175) - 4877840..4878670 (-) 831 WP_028411992.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=245999 CEQ83_RS25000 WP_028411997.1 4871940..4872302(-) (ssbB) [Priestia megaterium strain A]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=245999 CEQ83_RS25000 WP_028411997.1 4871940..4872302(-) (ssbB) [Priestia megaterium strain A]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508

Multiple sequence alignment