Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | B8B76_RS26405 | Genome accession | NZ_CP023316 |
| Coordinates | 5543776..5544648 (+) | Length | 290 a.a. |
| NCBI ID | WP_021264129.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PPF-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5538776..5549648
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B8B76_RS26380 (B8B76_26330) | nadC | 5539117..5539965 (+) | 849 | WP_021264134.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| B8B76_RS26390 (B8B76_26340) | pilA | 5540167..5540616 (-) | 450 | WP_021264133.1 | pilin | Machinery gene |
| B8B76_RS26395 (B8B76_26345) | pilB | 5540848..5542548 (+) | 1701 | WP_021264132.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| B8B76_RS26400 (B8B76_26350) | pilC | 5542552..5543772 (+) | 1221 | WP_023101565.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| B8B76_RS26405 (B8B76_26355) | pilD | 5543776..5544648 (+) | 873 | WP_021264129.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| B8B76_RS26410 (B8B76_26360) | coaE | 5544645..5545256 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| B8B76_RS26415 (B8B76_26365) | yacG | 5545253..5545453 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| B8B76_RS26420 (B8B76_26370) | - | 5545490..5545699 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| B8B76_RS26425 (B8B76_26375) | - | 5545805..5546494 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| B8B76_RS26430 (B8B76_26380) | - | 5546491..5546961 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| B8B76_RS26435 (B8B76_26385) | - | 5546958..5547383 (-) | 426 | WP_021264128.1 | GNAT family N-acetyltransferase | - |
| B8B76_RS26440 (B8B76_26390) | - | 5547516..5548145 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| B8B76_RS26445 (B8B76_26395) | - | 5548142..5548591 (+) | 450 | WP_021264127.1 | MOSC domain-containing protein | - |
| B8B76_RS26450 (B8B76_26400) | - | 5548617..5548787 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31823.84 Da Isoelectric Point: 7.3860
>NTDB_id=245934 B8B76_RS26405 WP_021264129.1 5543776..5544648(+) (pilD) [Pseudomonas aeruginosa strain PPF-1]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=245934 B8B76_RS26405 WP_021264129.1 5543776..5544648(+) (pilD) [Pseudomonas aeruginosa strain PPF-1]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.071 |
96.552 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |