Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CMV05_RS16580 Genome accession   NZ_CP023311
Coordinates   211798..213849 (+) Length   683 a.a.
NCBI ID   WP_096036876.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 206798..218849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS16570 (CMV05_16570) - 207476..208618 (+) 1143 WP_096036874.1 exonuclease SbcCD subunit D -
  CMV05_RS16575 (CMV05_16575) - 208618..211659 (+) 3042 WP_096036875.1 SMC family ATPase -
  CMV05_RS16580 (CMV05_16580) cqsS 211798..213849 (+) 2052 WP_096036876.1 hybrid sensor histidine kinase/response regulator Regulator
  CMV05_RS16585 (CMV05_16585) cqsA 213936..215117 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CMV05_RS16590 (CMV05_16590) - 215317..216291 (-) 975 WP_096036877.1 TDT family transporter -
  CMV05_RS16595 (CMV05_16595) clcA 216440..217837 (-) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78403.73 Da        Isoelectric Point: 5.3058

>NTDB_id=245886 CMV05_RS16580 WP_096036876.1 211798..213849(+) (cqsS) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESMELRTICAILFAGIIFRNSTPKHLQHYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVHETKVMLIQAAIALACAYFVTYGVMDAELRVMVEWPYVPIFLFTY
IFGNLFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPNPTASKSESYTLPSKDLELIAGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHAVKPVIEEALRSFSYKRPEDRQAVTLKVVDDFDFLGSSTLLKYVLYNLLKN
AFYYQNNDMFNIHITLKSNENCHQITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMHAFGGDIICRSELG
EWTEFTLTFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESALRREEFEFEFDLIFVDLQ
TLDETPDYLTKLEPKLHFTQAKVCYLYDQNQCYALTMERHLTIYPIEKHKLLLDGSAIIDELLFETEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRTSGMNDYVLKPADKTLLLKKLSHWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=245886 CMV05_RS16580 WP_096036876.1 211798..213849(+) (cqsS) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACCCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
CCTTTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGTATGGAGTTACGGACGATTTGCGCCATTTTAT
TTGCGGGGATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCACTACTTACCTTACTATTACTTGTTTTCAATAGGA
TTTTGTTTGCCATTCTTTTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCGTTCATGGCGTC
TATTTTCCTCCATATCCTCTTAGTCCACGAAACAAAAGTTATGCTGATTCAAGCCGCCATTGCATTAGCATGTGCTTACT
TTGTGACTTATGGCGTAATGGACGCGGAACTGCGAGTGATGGTGGAATGGCCGTACGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCTGTTCTATTTTCGTAACCAAATTGAACATGAAGCGAAGGTGTCGATTGCCAAGTCTTTTGGCGCAGG
GATTGCGCATGAAATGAGAAATCCATTAAGTGCGTTAAAAGCGTCAATTGAAGTAATGGGTTCAGTATTGCCCAATCCTA
CGGCATCCAAATCAGAATCTTATACGCTACCGTCTAAAGATTTAGAGCTGATTGCTGGGCTATTAAGAGATGCTGATGAA
GTCATTCGCTCCGGTAATGAGACCATTGATTTGCTGTTAACCTCGATTGATCAAAATAGGGTCTCAACATCGACCTTTAA
AAAGCATGCTGTAAAGCCTGTTATAGAAGAGGCACTGCGCAGTTTTTCTTATAAAAGACCAGAAGACAGGCAGGCAGTGA
CTCTTAAGGTGGTGGATGACTTTGATTTTTTAGGCAGCAGTACACTGTTAAAATACGTGCTCTACAATCTACTCAAGAAT
GCGTTCTACTATCAAAATAACGATATGTTTAATATCCATATCACCTTGAAATCAAATGAGAATTGCCACCAAATTACAGT
GAAAGACAATGGTGTTGGTATTGAACCTCATTTGCTGGACGATATTTTTAAAGACTTTTATACCTTCGGTAAAAATGGCA
GCTATGGTCTGGGGTTACCCTTTTGCCGTAAAGTAATGCATGCTTTTGGAGGAGATATTATCTGCCGTTCTGAACTTGGA
GAGTGGACGGAGTTTACTTTAACGTTTCCCGAGTATGATTCGCAAGCCGTCGCTAATATTAAACTCGATCTAATGAAGGC
GAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTGAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAGC
TTAATGTCTTAGAGCCTGAGAGTGCTTTGCGTCGAGAAGAGTTTGAATTTGAGTTTGATCTGATCTTTGTGGATCTGCAA
ACGTTGGATGAAACGCCGGATTACTTAACCAAACTGGAACCTAAACTGCATTTTACACAAGCAAAAGTTTGCTATTTATA
TGACCAAAATCAGTGTTACGCGTTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGATCGGCGATCATTGATGAACTACTCTTTGAAACGGAAGAGCTTATTGCCGATAAAAATGTTATCCCGTTAAAACAA
TATGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTACGTAGCTTCACCGCTCTGCTGCTAGAAAAGCA
AGGGTATGAAGTACTGCAAGCGAGCGATGGGGAATTAGCATTACAAATGTTGGCCAATAATTCAATTGACTTGGTGTTAA
TGGATATTGAAATGCCGATTATGGATGGTATTTCGGCCACTTTATCTATCCGTTCATCCACCGCTTCTTACAGTAAAGTG
CCTATTATTGGGCACACGGGTGACAATAGCCCTTCAACGATAGAAAAAATCCGTACATCAGGAATGAATGATTACGTTTT
AAAACCAGCGGATAAAACGCTATTGTTAAAAAAATTAAGTCACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)

Response regulator receiver domain (Response_reg)

(567-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.562

Multiple sequence alignment