Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY89_RS22820 Genome accession   NZ_CP028739
Coordinates   4667286..4667918 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain A36     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4662286..4672918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY89_RS22795 (AOY89_24230) yheS 4662455..4664368 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  AOY89_RS22800 (AOY89_24235) yheT 4664368..4665390 (+) 1023 WP_000057416.1 hydrolase -
  AOY89_RS22805 (AOY89_24240) yheU 4665384..4665602 (+) 219 WP_000907085.1 YheU family protein -
  AOY89_RS22810 (AOY89_24245) prkB 4665656..4666525 (+) 870 WP_001274680.1 phosphoribulokinase -
  AOY89_RS22815 (AOY89_24250) yhfA 4666580..4666984 (-) 405 WP_001148908.1 OsmC family protein -
  AOY89_RS22820 (AOY89_24260) crp 4667286..4667918 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY89_RS22825 (AOY89_24265) yhfK 4667969..4670059 (+) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  AOY89_RS22830 (AOY89_24270) argD 4670126..4671346 (-) 1221 WP_000963803.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY89_RS22835 (AOY89_24275) pabA 4671432..4671995 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  AOY89_RS22840 (AOY89_24280) fic 4672027..4672629 (-) 603 WP_042023739.1 putative adenosine monophosphate-protein transferase Fic -
  AOY89_RS22845 (AOY89_24285) yhfG 4672619..4672786 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=245847 AOY89_RS22820 WP_000242755.1 4667286..4667918(+) (crp) [Escherichia coli strain A36]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=245847 AOY89_RS22820 WP_000242755.1 4667286..4667918(+) (crp) [Escherichia coli strain A36]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGCCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment