Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CLM72_RS16210 Genome accession   NZ_CP023269
Coordinates   3591870..3594095 (-) Length   741 a.a.
NCBI ID   WP_236304381.1    Uniprot ID   -
Organism   Pseudomonas sp. MYb193     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586870..3599095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM72_RS16175 (CLM72_16060) murB 3587240..3588259 (-) 1020 WP_105227140.1 UDP-N-acetylmuramate dehydrogenase -
  CLM72_RS16180 (CLM72_16065) - 3588256..3588720 (-) 465 WP_054917236.1 low molecular weight protein-tyrosine-phosphatase -
  CLM72_RS16185 (CLM72_16070) kdsB 3588720..3589484 (-) 765 WP_105227141.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CLM72_RS16190 (CLM72_16075) - 3589481..3589666 (-) 186 WP_003174668.1 Trm112 family protein -
  CLM72_RS16195 (CLM72_16080) lpxK 3589691..3590701 (-) 1011 WP_105227142.1 tetraacyldisaccharide 4'-kinase -
  CLM72_RS16200 (CLM72_16085) - 3590701..3591129 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  CLM72_RS16205 (CLM72_16090) exbB 3591126..3591761 (-) 636 WP_034128146.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CLM72_RS16210 (CLM72_16095) comA 3591870..3594095 (-) 2226 WP_236304381.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CLM72_RS16215 (CLM72_16100) - 3594231..3594746 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  CLM72_RS16220 (CLM72_16105) - 3594750..3596108 (-) 1359 WP_105227144.1 sensor histidine kinase -
  CLM72_RS16225 (CLM72_16110) - 3596095..3596823 (-) 729 WP_105227145.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80300.44 Da        Isoelectric Point: 10.4475

>NTDB_id=245615 CLM72_RS16210 WP_236304381.1 3591870..3594095(-) (comA) [Pseudomonas sp. MYb193]
MKTGMLALALGLLALRWLPVLPPGAGLLAMLVLALMLLPFRSYPVAFFLVGLSWACLSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTGTGVRFELADGRSRKVRLPKRIRVSWHGGPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAMLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACMMVGLVLLWRLRLRHLGVWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSAWQVWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLLAVPWISLVVLPLAL
LGTALLWVPLAGEGLLWLAGGALDGLFKGLGLLAAQLPAWVPAEVPLGYWLVSLAGAVILLLPKGLPFRVLGWPMLLMAV
FAPREWVPHGQVDVVQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVAQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPDFLATQPCTSGERWEWEGVSFQLWQWADGLDGNPRSCVLQVEASGERLLLTGDIDRAAE
QAFLASSLAVQTDWLQAPHHGSRSSSSWPFLQRLAPTSVLISRGRSNTFGHPHPQVLERYHVLGSRVYDSAEQGAVRLRL
GAFLPPMVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=245615 CLM72_RS16210 WP_236304381.1 3591870..3594095(-) (comA) [Pseudomonas sp. MYb193]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGGCGTTGCGGTGGTTACCGGTGTTGCCGCCTGGCGCCGGGTT
GTTGGCAATGCTGGTGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCGTGGCGTTCTTTCTGGTGGGCTTGAGTT
GGGCCTGTCTCAGCGCGCAGCGGGCGCTGGATGATCGGCTGCAGCCGGCCCTGGACGGGCAGACTCGCTGGGTGGAGGGG
CGTGTGGTGGGCTTGCCTCAGCAGACGGGTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTCGCGCAAGGTTCGGCT
GCCCAAACGTATCCGCGTGTCCTGGCACGGGGGGCCAGTGGTGAACAGTGGTGAACGCTGGCGTCTGGCGTTGACACTCA
AGCGGCCTGCGGGCCTGCTCAATTTCCATGGGGTCGACCATGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGACGGTGAGCGTCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCGGCGCTGGTATTGGGCGACGGTTCCGGCCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTACATCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCGGGGTTGATCTACGGCTTG
GTCGCGATGCTGGCGCGTTATGGTTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGTCTGGCATTTGGTGC
GGCGTTGGGTTATGGGCTGCTGGCCGGGTTCGGCGTGCCGGTGCAACGGGCCTGCATGATGGTCGGCCTGGTGCTGCTGT
GGCGTCTGCGTTTGCGCCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCACTGAACGGCGTGCTGGTACTGGAGCCCTTG
GCCAGCCTGCAGGTAGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGCTGTTGGCGTTCGGCGGGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTGTGGACCCGGCCCCAGTGGCTGATTGCCATTGGTTTGTTTCCAGTGTTGCTGGTGCTGGGGT
TGCCCATCAGCCTCAGCGCACCTGTGGCCAATCTCCTTGCCGTGCCTTGGATCAGCCTGGTAGTGCTGCCTTTGGCGCTG
CTGGGCACGGCGTTGCTGTGGGTGCCGCTGGCTGGGGAGGGGCTGCTGTGGCTGGCCGGCGGTGCGCTGGACGGATTGTT
TAAAGGCCTGGGGTTGCTGGCCGCGCAATTGCCGGCCTGGGTACCCGCCGAGGTACCTTTGGGGTATTGGTTGGTTAGCC
TGGCTGGCGCGGTGATTTTGTTGCTGCCCAAGGGGTTGCCGTTCCGGGTGCTGGGCTGGCCCATGCTGTTGATGGCTGTA
TTTGCGCCCAGGGAGTGGGTGCCCCACGGGCAGGTAGATGTGGTGCAACTGGACGTCGGCCAGGGGCAGGCACTGATCCT
GCGCACCCGTCATCATACGTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTGGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAGCTCGGGGTAGCCCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCTGATCACGCGGGGGGTGCG
GCGGCGGTGGCTCGGGGGTTGCCCGTCAAGCGTGTGGTGGGCGGTGAAACCGAAGGTTTGCCAGACTTTCTTGCCACCCA
ACCCTGTACCAGCGGCGAACGATGGGAATGGGAGGGTGTGTCATTTCAATTGTGGCAGTGGGCTGATGGACTTGATGGCA
ATCCTAGATCTTGTGTGTTGCAGGTTGAGGCCAGTGGAGAACGCCTGCTGCTCACCGGTGACATTGATCGCGCCGCCGAA
CAGGCTTTTCTGGCCTCTTCGCTGGCGGTTCAGACCGACTGGCTGCAAGCCCCGCACCATGGCAGCCGCAGTTCTTCATC
CTGGCCGTTCCTGCAACGGTTGGCGCCCACATCGGTGTTGATTTCCCGCGGGCGCAGCAATACGTTCGGTCATCCCCATC
CGCAGGTCCTGGAGCGCTACCACGTGCTGGGCAGCCGGGTTTACGACAGCGCCGAGCAGGGTGCCGTACGCTTGCGCCTG
GGGGCGTTTCTGCCACCGATGGTTGCGCGCAGTCAACGCCGTTTTTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.244

96.356

0.571
  comA Ralstonia pseudosolanacearum GMI1000

34.673

100

0.372

Multiple sequence alignment