Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CLM72_RS16205 Genome accession   NZ_CP023269
Coordinates   3591126..3591761 (-) Length   211 a.a.
NCBI ID   WP_034128146.1    Uniprot ID   A0A7Y0WIC3
Organism   Pseudomonas sp. MYb193     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586126..3596761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM72_RS16170 (CLM72_16055) - 3586497..3587168 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  CLM72_RS16175 (CLM72_16060) murB 3587240..3588259 (-) 1020 WP_105227140.1 UDP-N-acetylmuramate dehydrogenase -
  CLM72_RS16180 (CLM72_16065) - 3588256..3588720 (-) 465 WP_054917236.1 low molecular weight protein-tyrosine-phosphatase -
  CLM72_RS16185 (CLM72_16070) kdsB 3588720..3589484 (-) 765 WP_105227141.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CLM72_RS16190 (CLM72_16075) - 3589481..3589666 (-) 186 WP_003174668.1 Trm112 family protein -
  CLM72_RS16195 (CLM72_16080) lpxK 3589691..3590701 (-) 1011 WP_105227142.1 tetraacyldisaccharide 4'-kinase -
  CLM72_RS16200 (CLM72_16085) - 3590701..3591129 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  CLM72_RS16205 (CLM72_16090) exbB 3591126..3591761 (-) 636 WP_034128146.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CLM72_RS16210 (CLM72_16095) comA 3591870..3594095 (-) 2226 WP_236304381.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CLM72_RS16215 (CLM72_16100) - 3594231..3594746 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  CLM72_RS16220 (CLM72_16105) - 3594750..3596108 (-) 1359 WP_105227144.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22867.01 Da        Isoelectric Point: 7.3615

>NTDB_id=245614 CLM72_RS16205 WP_034128146.1 3591126..3591761(-) (exbB) [Pseudomonas sp. MYb193]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=245614 CLM72_RS16205 WP_034128146.1 3591126..3591761(-) (exbB) [Pseudomonas sp. MYb193]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCTGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTAGCCGCCGGTCTGGCCAAT
TCCAAGCATGGTCGTGAGATCATGAAGGAGTGCATCGAAGAGGCGGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTTGGCACCATCGCCGCCATGGCGCCGCTGCTTGGTTTGCTCGGCACAGTACTCGGCATGATCGATATCTTCA
GCTCGTTCACAGGCTCGGGCATGACCACCAACGCAGCGGTCCTGGCCGGGGGGATCTCCAAGGCGTTGATCACCACCGCA
GCCGGCCTGATGGTAGGTATCCCTTCGGTGTTCTTCCACCGTTTCCTGCTGCGTCGCATTGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0WIC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment