Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY59_RS02170 Genome accession   NZ_CP028733
Coordinates   463946..464578 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain H2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 458946..469578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY59_RS02145 (AOY59_02275) yhfG 459078..459245 (+) 168 WP_000736860.1 YhfG family protein -
  AOY59_RS02150 (AOY59_02280) fic 459235..459837 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AOY59_RS02155 (AOY59_02285) pabA 459869..460432 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AOY59_RS02160 (AOY59_02290) argD 460518..461738 (+) 1221 WP_000963797.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY59_RS02165 (AOY59_02295) yhfK 461805..463895 (-) 2091 WP_001297515.1 YccS/YhfK family putative transporter -
  AOY59_RS02170 (AOY59_02300) crp 463946..464578 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY59_RS02175 (AOY59_02310) yhfA 464880..465284 (+) 405 WP_001148908.1 OsmC family protein -
  AOY59_RS02180 (AOY59_02315) prkB 465339..466208 (-) 870 WP_001274680.1 phosphoribulokinase -
  AOY59_RS02185 (AOY59_02320) yheU 466262..466480 (-) 219 WP_000907085.1 YheU family protein -
  AOY59_RS02190 (AOY59_02325) yheT 466474..467496 (-) 1023 WP_096948967.1 hydrolase -
  AOY59_RS02195 (AOY59_02330) yheS 467496..469409 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=245385 AOY59_RS02170 WP_000242755.1 463946..464578(-) (crp) [Escherichia coli strain H2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=245385 AOY59_RS02170 WP_000242755.1 463946..464578(-) (crp) [Escherichia coli strain H2]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467