Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | CLI14_RS11430 | Genome accession | NZ_CP023208 |
| Coordinates | 2501729..2502610 (+) | Length | 293 a.a. |
| NCBI ID | WP_013857687.1 | Uniprot ID | A0AAW4AAE0 |
| Organism | Vibrio anguillarum strain ATCC-68554 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2496729..2507610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLI14_RS11410 (CLI14_11410) | nadC | 2497153..2498040 (+) | 888 | WP_013857682.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CLI14_RS11415 (CLI14_11415) | pilA | 2498299..2498724 (+) | 426 | WP_040122945.1 | pilin | Machinery gene |
| CLI14_RS11420 (CLI14_11420) | pilB | 2498734..2500421 (+) | 1688 | Protein_2198 | type IV-A pilus assembly ATPase PilB | - |
| CLI14_RS11425 (CLI14_11425) | pilC | 2500464..2501690 (+) | 1227 | WP_013857686.1 | type II secretion system F family protein | Machinery gene |
| CLI14_RS11430 (CLI14_11430) | pilD | 2501729..2502610 (+) | 882 | WP_013857687.1 | A24 family peptidase | Machinery gene |
| CLI14_RS11435 (CLI14_11435) | coaE | 2502601..2503209 (+) | 609 | WP_013857688.1 | dephospho-CoA kinase | - |
| CLI14_RS11440 (CLI14_11440) | zapD | 2503242..2503982 (+) | 741 | WP_013857689.1 | cell division protein ZapD | - |
| CLI14_RS11445 (CLI14_11445) | yacG | 2504072..2504269 (+) | 198 | WP_010319526.1 | DNA gyrase inhibitor YacG | - |
| CLI14_RS11450 (CLI14_11450) | rplS | 2504350..2504703 (-) | 354 | WP_010319525.1 | 50S ribosomal protein L19 | - |
| CLI14_RS11455 (CLI14_11455) | trmD | 2504745..2505491 (-) | 747 | WP_010319524.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| CLI14_RS11460 (CLI14_11460) | rimM | 2505519..2506073 (-) | 555 | WP_013857691.1 | ribosome maturation factor RimM | - |
| CLI14_RS11465 (CLI14_11465) | rpsP | 2506103..2506351 (-) | 249 | WP_010319522.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 293 a.a. Molecular weight: 32890.17 Da Isoelectric Point: 7.2157
>NTDB_id=245324 CLI14_RS11430 WP_013857687.1 2501729..2502610(+) (pilD) [Vibrio anguillarum strain ATCC-68554]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG
Nucleotide
Download Length: 882 bp
>NTDB_id=245324 CLI14_RS11430 WP_013857687.1 2501729..2502610(+) (pilD) [Vibrio anguillarum strain ATCC-68554]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
77.083 |
98.294 |
0.758 |
| pilD | Vibrio campbellii strain DS40M4 |
76.471 |
98.635 |
0.754 |
| pilD | Acinetobacter nosocomialis M2 |
56.458 |
92.491 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
56.089 |
92.491 |
0.519 |
| pilD | Neisseria gonorrhoeae MS11 |
46.552 |
98.976 |
0.461 |