Detailed information NTG0245308

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: CLI14_RS05315
• Genome accession: NZ_CP023208
• Coordinates: 1119439..1121682 (+)
• Length: 747 a.a.
• NCBI ID: WP_029189791.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain ATCC-68554
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1114439..1126682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLI14_RS05290 (CLI14_05290)	-	1114917..1115486 (-)	570	WP_013856528.1	hypothetical protein	-
CLI14_RS05295 (CLI14_05295)	lolC	1115652..1116860 (+)	1209	WP_013856529.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
CLI14_RS05300 (CLI14_05300)	lolD	1116853..1117539 (+)	687	WP_013856530.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
CLI14_RS05305 (CLI14_05305)	lolE	1117540..1118784 (+)	1245	WP_013856531.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
CLI14_RS05310 (CLI14_05310)	-	1118923..1119432 (-)	510	WP_010319231.1	DUF2062 domain-containing protein	-
CLI14_RS05315 (CLI14_05315)	comEC	1119439..1121682 (+)	2244	WP_029189791.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
CLI14_RS05320 (CLI14_05320)	msbA	1121715..1123463 (+)	1749	WP_013856533.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
CLI14_RS05325 (CLI14_05325)	lpxK	1123467..1124474 (+)	1008	WP_013856534.1	tetraacyldisaccharide 4'-kinase	-
CLI14_RS05330 (CLI14_05330)	-	1124455..1124634 (+)	180	WP_013856535.1	Trm112 family protein	-
CLI14_RS05335 (CLI14_05335)	kdsB	1124634..1125386 (+)	753	WP_013856536.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CLI14_RS05340 (CLI14_05340)	-	1125429..1125947 (-)	519	WP_013856537.1	cytochrome b	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 83533.44 Da
• Isoelectric Point: 9.4397

>NTDB_id=245308 CLI14_RS05315 WP_029189791.1 1119439..1121682(+) (comEC) [Vibrio anguillarum strain ATCC-68554]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVVYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTNRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTFLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide

• Length: 2244 bp

>NTDB_id=245308 CLI14_RS05315 WP_029189791.1 1119439..1121682(+) (comEC) [Vibrio anguillarum strain ATCC-68554]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGTTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATAGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCGCA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCGCTCATCATGTGTT
TGCTCAATGTGGCGATGATTGTTCTCAATGTCCGTATCAATACTTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTAATCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTCTGTACGTTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTGCTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTAGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCTATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAACCCTGAAGTCGCTATTGCCTCGCTCGCTAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterProScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-172)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-681)

• Competence protein (Competence) (208-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio cholerae strain A1552	51.872	100	0.519
comEC	Vibrio parahaemolyticus RIMD 2210633	43.931	100	0.446
comEC	Vibrio campbellii strain DS40M4	43.857	100	0.444