Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DBA17_RS10090 Genome accession   NZ_CP028719
Coordinates   2385437..2387584 (-) Length   715 a.a.
NCBI ID   WP_037662681.1    Uniprot ID   A0A1X4GM35
Organism   Streptomyces sp. endophyte_N2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2380437..2392584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBA17_RS10075 - 2381500..2382504 (-) 1005 WP_128793601.1 TerC family protein -
  DBA17_RS10080 - 2382730..2384649 (-) 1920 WP_128789555.1 TerD family protein -
  DBA17_RS10085 - 2384703..2385281 (-) 579 WP_037662684.1 TerD family protein -
  DBA17_RS10090 uvrB 2385437..2387584 (-) 2148 WP_037662681.1 excinuclease ABC subunit UvrB Machinery gene
  DBA17_RS10095 - 2387625..2388503 (-) 879 WP_128789556.1 MHYT domain-containing protein -
  DBA17_RS10100 - 2388799..2389674 (+) 876 WP_128789557.1 glycerophosphodiester phosphodiesterase family protein -
  DBA17_RS10105 - 2389768..2390322 (+) 555 WP_128789558.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DBA17_RS10110 - 2390492..2391400 (+) 909 WP_128789559.1 pseudouridine-5'-phosphate glycosidase -
  DBA17_RS10115 - 2391385..2392344 (+) 960 WP_128789560.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80352.34 Da        Isoelectric Point: 4.9958

>NTDB_id=245239 DBA17_RS10090 WP_037662681.1 2385437..2387584(-) (uvrB) [Streptomyces sp. endophyte_N2]
MRPVSHIERTVAPIEVVSPYQPSGDQPTAIADLAKRIKAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDELLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDQQLYVFPASHYIAGPERMERAVNDIEKELAERLAEMEKQGKLLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEHGFRLPSALDNRPLKWEEFQKRVGQTVYL
SATPGNYELSRSDGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTDKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMDRAIDETNRRREKQIAYNKANGIDPQPLRKKINDIVAQIAREEVDTEQLLGSGYRKSKDGKGAKAPVPALSD
KAVKGGKAAKGAKGKAAATVPTDRPAAELAEQIEEMTERMRAAAAELQFEIAARLRDEVSEMKKELRQMREAGIA

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=245239 DBA17_RS10090 WP_037662681.1 2385437..2387584(-) (uvrB) [Streptomyces sp. endophyte_N2]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCCATCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGACCTGGCCAAGCGCATCAAGGCCGGCGAGAAGGACGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACACTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTCCCGAACAACGCGGTCGAATACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCATACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CGGCGACCAACTCGCTGCTCACCCGCCGTGACGTCGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTGGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCAGAGTCGGCGACGAGATCGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACCTGGCCTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACGCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCCGCCTCCCACTACATCGCAGGGCCCGAGCGCATGGAGCGGGC
CGTCAACGACATCGAGAAGGAGCTGGCCGAGCGCCTGGCCGAGATGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACCTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCTCCCCGCCCAACACTTTGCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGTAAGCGCACCCTTGTGGAGCACGGCT
TCCGTCTGCCCTCCGCCCTGGACAACCGGCCCCTGAAGTGGGAGGAGTTCCAGAAGCGCGTCGGACAGACCGTCTACCTG
TCGGCCACCCCCGGAAACTACGAGCTGTCGCGCTCCGACGGTGTCGTCGAGCAGATCATCCGCCCGACCGGCCTGGTCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGACAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCAGAGGACCTCACCGACTACTTCCTGGAACTGGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCGTGGAACTGCTGCGCGAACTGCGCGCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGAGAGGGCCTCGACCTGCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGTACGTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGTCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGACCGCGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCCTACAACAA
GGCCAACGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTCCTCGGCAGCGGCTACCGCAAGTCGAAGGACGGCAAGGGCGCCAAGGCCCCCGTGCCCGCGCTGAGCGAC
AAGGCGGTCAAGGGCGGCAAGGCGGCCAAGGGCGCGAAGGGCAAGGCCGCGGCCACGGTGCCGACGGACCGTCCGGCGGC
CGAACTCGCCGAACAGATCGAGGAGATGACCGAGCGCATGCGCGCCGCCGCCGCGGAGCTCCAGTTCGAGATCGCGGCCC
GGCTGCGCGACGAGGTCTCGGAGATGAAGAAGGAGCTGCGCCAGATGCGGGAGGCGGGCATCGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(671-704)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X4GM35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.96

98.462

0.561
  uvrB Streptococcus pneumoniae R6

56.96

98.462

0.561
  uvrB Streptococcus pneumoniae D39

56.96

98.462

0.561

Multiple sequence alignment