Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DBB47_RS01920 Genome accession   NZ_CP028703
Coordinates   396975..397607 (-) Length   210 a.a.
NCBI ID   WP_000242747.1    Uniprot ID   -
Organism   Escherichia coli strain ME8067     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 391975..402607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBB47_RS01895 (DBB47_01895) yhfG 392107..392274 (+) 168 WP_000736862.1 YhfG family protein -
  DBB47_RS01900 (DBB47_01900) fic 392264..392866 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  DBB47_RS01905 (DBB47_01905) pabA 392898..393461 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  DBB47_RS01910 (DBB47_01910) argD 393547..394767 (+) 1221 WP_108118540.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  DBB47_RS01915 (DBB47_01915) yhfK 394834..396924 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  DBB47_RS01920 (DBB47_01920) crp 396975..397607 (-) 633 WP_000242747.1 cAMP-activated global transcriptional regulator CRP Regulator
  DBB47_RS01930 (DBB47_01930) yhfA 397909..398313 (+) 405 WP_001148908.1 OsmC family protein -
  DBB47_RS01935 (DBB47_01935) prkB 398368..399237 (-) 870 WP_001274680.1 phosphoribulokinase -
  DBB47_RS01940 (DBB47_01940) yheU 399291..399509 (-) 219 WP_000907085.1 YheU family protein -
  DBB47_RS01945 (DBB47_01945) yheT 399503..400525 (-) 1023 WP_000057356.1 hydrolase -
  DBB47_RS01950 (DBB47_01950) yheS 400525..402438 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23667.49 Da        Isoelectric Point: 8.6624

>NTDB_id=245152 DBB47_RS01920 WP_000242747.1 396975..397607(-) (crp) [Escherichia coli strain ME8067]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSKLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=245152 DBB47_RS01920 WP_000242747.1 396975..397607(-) (crp) [Escherichia coli strain ME8067]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment