Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CK945_RS20500 Genome accession   NZ_CP023168
Coordinates   3939354..3940043 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain 14DA11     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934354..3945043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS20465 - 3934525..3935001 (-) 477 WP_023856391.1 flagellar protein FlgN -
  CK945_RS20470 flgM 3935020..3935286 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  CK945_RS20475 - 3935366..3935785 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  CK945_RS20480 comFC 3935844..3936578 (-) 735 WP_096748349.1 double zinc ribbon domain-containing protein Machinery gene
  CK945_RS20485 - 3936535..3936819 (-) 285 WP_096748350.1 late competence development ComFB family protein -
  CK945_RS20490 comFA 3936874..3938268 (-) 1395 WP_096748475.1 DEAD/DEAH box helicase Machinery gene
  CK945_RS20495 - 3938392..3939234 (-) 843 WP_096748351.1 DegV family protein -
  CK945_RS20500 degU 3939354..3940043 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CK945_RS20505 degS 3940125..3941282 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  CK945_RS20510 - 3941505..3942143 (+) 639 WP_020453120.1 YigZ family protein -
  CK945_RS20515 - 3942158..3943237 (+) 1080 WP_020453121.1 LCP family protein -
  CK945_RS20520 - 3943290..3943673 (-) 384 WP_020453122.1 hypothetical protein -
  CK945_RS20525 - 3943782..3944846 (-) 1065 WP_020453123.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=245138 CK945_RS20500 WP_003185730.1 3939354..3940043(-) (degU) [Bacillus paralicheniformis strain 14DA11]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=245138 CK945_RS20500 WP_003185730.1 3939354..3940043(-) (degU) [Bacillus paralicheniformis strain 14DA11]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAACATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment