Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CK945_RS20490 Genome accession   NZ_CP023168
Coordinates   3936874..3938268 (-) Length   464 a.a.
NCBI ID   WP_096748475.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 14DA11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3931874..3943268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS20455 flgL 3932064..3932975 (-) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  CK945_RS20460 flgK 3932986..3934509 (-) 1524 WP_020453111.1 flagellar hook-associated protein FlgK -
  CK945_RS20465 - 3934525..3935001 (-) 477 WP_023856391.1 flagellar protein FlgN -
  CK945_RS20470 flgM 3935020..3935286 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  CK945_RS20475 - 3935366..3935785 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  CK945_RS20480 comFC 3935844..3936578 (-) 735 WP_096748349.1 double zinc ribbon domain-containing protein Machinery gene
  CK945_RS20485 - 3936535..3936819 (-) 285 WP_096748350.1 late competence development ComFB family protein -
  CK945_RS20490 comFA 3936874..3938268 (-) 1395 WP_096748475.1 DEAD/DEAH box helicase Machinery gene
  CK945_RS20495 - 3938392..3939234 (-) 843 WP_096748351.1 DegV family protein -
  CK945_RS20500 degU 3939354..3940043 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CK945_RS20505 degS 3940125..3941282 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  CK945_RS20510 - 3941505..3942143 (+) 639 WP_020453120.1 YigZ family protein -
  CK945_RS20515 - 3942158..3943237 (+) 1080 WP_020453121.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52975.59 Da        Isoelectric Point: 9.6108

>NTDB_id=245137 CK945_RS20490 WP_096748475.1 3936874..3938268(-) (comFA) [Bacillus paralicheniformis strain 14DA11]
MIHIEHPASYSCELRSCLEQRHLLKSELSFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGMEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFHLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNAARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=245137 CK945_RS20490 WP_096748475.1 3936874..3938268(-) (comFA) [Bacillus paralicheniformis strain 14DA11]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTTCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGATGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCACCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCTTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-270)

Helicase conserved C-terminal domain (Helicase_C)

(318-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.642

98.707

0.569

Multiple sequence alignment