Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CK238_RS17815 Genome accession   NZ_CP023075
Coordinates   3499943..3500632 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain K26     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3494943..3505632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS17780 (CK238_17780) - 3495141..3495623 (-) 483 WP_022553865.1 flagellar protein FlgN -
  CK238_RS17785 (CK238_17785) flgM 3495638..3495904 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CK238_RS17790 (CK238_17790) - 3495974..3496393 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CK238_RS17795 (CK238_17795) comFC 3496467..3497156 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  CK238_RS17800 (CK238_17800) - 3497162..3497446 (-) 285 WP_022553866.1 competence protein ComFB -
  CK238_RS17805 (CK238_17805) comFA 3497504..3498889 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  CK238_RS17810 (CK238_17810) - 3498997..3499845 (-) 849 WP_003151387.1 DegV family protein -
  CK238_RS17815 (CK238_17815) degU 3499943..3500632 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CK238_RS17820 (CK238_17820) degS 3500709..3501872 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CK238_RS17825 (CK238_17825) - 3502095..3502742 (+) 648 WP_063636496.1 YigZ family protein -
  CK238_RS17830 (CK238_17830) - 3502747..3503940 (+) 1194 WP_017418814.1 LCP family protein -
  CK238_RS17835 (CK238_17835) - 3504040..3505116 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=244801 CK238_RS17815 WP_003219701.1 3499943..3500632(-) (degU) [Bacillus velezensis strain K26]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=244801 CK238_RS17815 WP_003219701.1 3499943..3500632(-) (degU) [Bacillus velezensis strain K26]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment