Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CK238_RS17795 Genome accession   NZ_CP023075
Coordinates   3496467..3497156 (-) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus velezensis strain K26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491467..3502156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS17760 (CK238_17760) fliW 3491558..3491989 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  CK238_RS17765 (CK238_17765) - 3492019..3492588 (-) 570 WP_017418818.1 DUF6470 family protein -
  CK238_RS17770 (CK238_17770) flgL 3492679..3493596 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  CK238_RS17775 (CK238_17775) flgK 3493608..3495125 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  CK238_RS17780 (CK238_17780) - 3495141..3495623 (-) 483 WP_022553865.1 flagellar protein FlgN -
  CK238_RS17785 (CK238_17785) flgM 3495638..3495904 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CK238_RS17790 (CK238_17790) - 3495974..3496393 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CK238_RS17795 (CK238_17795) comFC 3496467..3497156 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  CK238_RS17800 (CK238_17800) - 3497162..3497446 (-) 285 WP_022553866.1 competence protein ComFB -
  CK238_RS17805 (CK238_17805) comFA 3497504..3498889 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  CK238_RS17810 (CK238_17810) - 3498997..3499845 (-) 849 WP_003151387.1 DegV family protein -
  CK238_RS17815 (CK238_17815) degU 3499943..3500632 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CK238_RS17820 (CK238_17820) degS 3500709..3501872 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=244799 CK238_RS17795 WP_199803302.1 3496467..3497156(-) (comFC) [Bacillus velezensis strain K26]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=244799 CK238_RS17795 WP_199803302.1 3496467..3497156(-) (comFC) [Bacillus velezensis strain K26]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment