Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CK496_RS00040 Genome accession   NZ_CP023074
Coordinates   9200..9712 (+) Length   170 a.a.
NCBI ID   WP_067483650.1    Uniprot ID   A0AA91PQH3
Organism   Enterococcus thailandicus strain a523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4200..14712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK496_RS00025 (CK496_00025) gyrB 4210..6156 (+) 1947 WP_071869226.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CK496_RS00030 (CK496_00030) gyrA 6178..8670 (+) 2493 WP_095803320.1 DNA gyrase subunit A -
  CK496_RS00035 (CK496_00035) rpsF 8853..9152 (+) 300 WP_067483652.1 30S ribosomal protein S6 -
  CK496_RS00040 (CK496_00040) ssb 9200..9712 (+) 513 WP_067483650.1 single-stranded DNA-binding protein Machinery gene
  CK496_RS00045 (CK496_00045) rpsR 9737..9973 (+) 237 WP_016623165.1 30S ribosomal protein S18 -
  CK496_RS00050 (CK496_00050) - 10141..12114 (+) 1974 WP_067483648.1 DHH family phosphoesterase -
  CK496_RS00055 (CK496_00055) rplI 12120..12572 (+) 453 WP_067483646.1 50S ribosomal protein L9 -
  CK496_RS00060 (CK496_00060) dnaB 12757..14124 (+) 1368 WP_067483644.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18747.34 Da        Isoelectric Point: 4.6742

>NTDB_id=244698 CK496_RS00040 WP_067483650.1 9200..9712(+) (ssb) [Enterococcus thailandicus strain a523]
MINNVVLVGRLTKDPDLRYTSNGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETMANYARKGTLLGVTGRIQTR
SYDNQQGQKVYVTEVVADNFQLLESRSASENRQQSGGFQSSNQSTNTFGGNNNFNQTSQSSNGMPDFDRDTTDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=244698 CK496_RS00040 WP_067483650.1 9200..9712(+) (ssb) [Enterococcus thailandicus strain a523]
TTGATTAATAATGTTGTACTAGTTGGACGTCTGACTAAAGATCCGGATTTACGATACACATCAAACGGAACTGCAGTAGC
AACGTTTACTCTGGCCGTAAATCGTAATTTTACAAACCAAAGTGGAAATCGAGAGGCTGACTTTATTAACTGCGTTATTT
GGCGTAAATCAGCAGAAACAATGGCTAACTATGCACGTAAAGGTACACTTTTAGGTGTTACTGGTCGTATTCAAACACGT
TCTTATGATAATCAACAAGGACAAAAAGTCTATGTTACAGAAGTAGTAGCTGATAACTTCCAATTATTGGAATCTCGTTC
TGCATCAGAAAATCGTCAACAAAGTGGCGGTTTCCAAAGCTCAAACCAATCAACAAACACATTTGGTGGAAACAATAACT
TTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACACAACTGATCCATTTGGTTCAAGTTCAACG
ATTGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

62.353

0.394

Multiple sequence alignment