Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CJD39_RS09500 Genome accession   NZ_CP023057
Coordinates   1992039..1992680 (-) Length   213 a.a.
NCBI ID   WP_111748897.1    Uniprot ID   -
Organism   Glaesserella sp. 15-184     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1987039..1997680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJD39_RS09485 (CJD39_09420) - 1987882..1988493 (-) 612 WP_111748895.1 NAD(P)-binding oxidoreductase -
  CJD39_RS09490 (CJD39_09425) hutW 1988490..1990319 (-) 1830 WP_181015858.1 heme anaerobic degradation radical SAM methyltransferase ChuW/HutW -
  CJD39_RS09495 (CJD39_09430) fumC 1990500..1991894 (-) 1395 WP_111748896.1 class II fumarate hydratase -
  CJD39_RS09500 (CJD39_09435) sxy/tfoX 1992039..1992680 (-) 642 WP_111748897.1 TfoX/Sxy family protein Regulator
  CJD39_RS09505 (CJD39_09440) rpsJ 1993143..1993454 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  CJD39_RS09510 (CJD39_09445) rplC 1993471..1994097 (+) 627 WP_005711168.1 50S ribosomal protein L3 -
  CJD39_RS09515 (CJD39_09450) rplD 1994113..1994715 (+) 603 WP_111748898.1 50S ribosomal protein L4 -
  CJD39_RS09520 (CJD39_09455) rplW 1994712..1995017 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  CJD39_RS09525 (CJD39_09460) rplB 1995038..1995859 (+) 822 WP_005711173.1 50S ribosomal protein L2 -
  CJD39_RS09530 (CJD39_09465) rpsS 1995888..1996163 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  CJD39_RS09535 (CJD39_09470) rplV 1996174..1996506 (+) 333 WP_005706427.1 50S ribosomal protein L22 -
  CJD39_RS09540 (CJD39_09475) rpsC 1996524..1997228 (+) 705 WP_010786465.1 30S ribosomal protein S3 -
  CJD39_RS09545 (CJD39_09480) rplP 1997241..1997651 (+) 411 WP_006249357.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 25360.47 Da        Isoelectric Point: 9.9460

>NTDB_id=244652 CJD39_RS09500 WP_111748897.1 1992039..1992680(-) (sxy/tfoX) [Glaesserella sp. 15-184]
MKYIDVQTQHVRDQLYPIIGHTTAKTYFSYYGIMKDEIMFALYKNGHFYLHIPKEYLHELNQYPQITRLRDERYGINSKT
FYLLPEEMMTNLFSYSHWFKQSIKSISHTRQLNYSRKKQYIRSLPNMNIQLERTLKKLGITSPSELMAQGEIAIFVNLVK
IGIDVDQMMLFRLHGAIRHQYIYTLSEQEKIALLQETNSALYAAGLRKRFTIK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=244652 CJD39_RS09500 WP_111748897.1 1992039..1992680(-) (sxy/tfoX) [Glaesserella sp. 15-184]
ATGAAATACATTGATGTACAAACACAACATGTCCGCGATCAACTCTATCCAATTATTGGTCATACAACAGCCAAAACTTA
TTTCTCTTACTACGGTATTATGAAAGATGAGATTATGTTCGCACTCTATAAAAATGGACACTTTTATCTCCATATACCTA
AGGAATATTTACATGAACTTAACCAATATCCCCAAATAACTCGTTTGCGTGATGAACGCTACGGCATAAATTCTAAAACT
TTTTATCTCTTACCCGAAGAAATGATGACTAATTTATTCTCTTATTCCCATTGGTTCAAACAAAGTATCAAATCTATTTC
TCATACACGTCAATTAAATTACTCCAGAAAAAAACAATACATACGTTCCTTACCTAACATGAATATCCAACTTGAAAGAA
CATTAAAAAAACTAGGAATAACGTCTCCTAGTGAGCTAATGGCACAAGGTGAAATTGCTATCTTTGTTAATCTTGTGAAA
ATCGGTATTGATGTTGACCAAATGATGTTATTTAGATTACATGGGGCAATCAGGCATCAATATATCTACACATTATCAGA
GCAGGAAAAAATAGCACTATTACAAGAAACAAATAGCGCATTATACGCAGCCGGTTTACGTAAGCGTTTCACCATAAAAT
AG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-104)

TfoX C-terminal domain (TfoX_C)

(119-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

61.502

100

0.615
  sxy/tfoX Actinobacillus suis H91-0380

42.453

99.531

0.423
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

40.845

100

0.408

Multiple sequence alignment