Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CK207_RS13490 Genome accession   NZ_CP023054
Coordinates   2878200..2878832 (+) Length   210 a.a.
NCBI ID   WP_010318741.1    Uniprot ID   A0AAW8GZN2
Organism   Vibrio anguillarum strain VIB43     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2873200..2883832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS13465 (CK207_13465) - 2873276..2875195 (+) 1920 WP_017049199.1 ABC transporter ATP-binding protein -
  CK207_RS13470 (CK207_13470) - 2875197..2875676 (+) 480 WP_010318745.1 TIGR02444 family protein -
  CK207_RS13475 (CK207_13475) - 2875733..2876740 (+) 1008 WP_019282421.1 hydrolase -
  CK207_RS13480 (CK207_13480) - 2876800..2877006 (+) 207 WP_010318743.1 YheU family protein -
  CK207_RS13485 (CK207_13485) - 2877089..2877958 (+) 870 WP_019282422.1 phosphoribulokinase -
  CK207_RS13490 (CK207_13490) crp 2878200..2878832 (+) 633 WP_010318741.1 cAMP-activated global transcriptional regulator CRP Regulator
  CK207_RS13495 (CK207_13495) - 2878936..2879730 (-) 795 WP_019282423.1 DUF1338 domain-containing protein -
  CK207_RS13500 (CK207_13500) astD 2879799..2881256 (-) 1458 WP_019282424.1 succinylglutamate-semialdehyde dehydrogenase -
  CK207_RS13505 (CK207_13505) astA 2881288..2882307 (-) 1020 WP_029388269.1 arginine N-succinyltransferase -
  CK207_RS13510 (CK207_13510) - 2882374..2883585 (-) 1212 WP_029388270.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23663.44 Da        Isoelectric Point: 7.8388

>NTDB_id=244616 CK207_RS13490 WP_010318741.1 2878200..2878832(+) (crp) [Vibrio anguillarum strain VIB43]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=244616 CK207_RS13490 WP_010318741.1 2878200..2878832(+) (crp) [Vibrio anguillarum strain VIB43]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATACCCATCGAA
AAGCACGTTGATTCATGCGGGCGAAAAAGCAGAGACGCTGTACTACATCGTCAAAGGCTCGGTAGCGGTATTGATTAAAG
ACGAAGAAGGTAAAGAGATGATCCTCTCTTACCTCAACCAAGGTGACTTTATCGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCGGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTGTCTGCACAAATTTCTCGACGCCTGCAAGTCACCAGTCAAAAAGTAGGCG
ATTTAGCCTTCCTAGACGTGACGGGTCGTATTGCACAAACGCTACTCAACCTAGCGAAACAACCTGATGCAATGACGCAC
CCAGATGGCATGCAAATCAAAATCACCCGTCAAGAGATCGGCCAAATTGTAGGCTGTTCTCGTGAAACTGTGGGACGTAT
TTTGAAGATGCTCGAAGAGCAGAATTTAATTTCTGCCCACGGTAAAACTATCGTGGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment