Detailed information NTG0244598

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CK207_RS02885
• Genome accession: NZ_CP023054
• Coordinates: 563389..564270 (-)
• Length: 293 a.a.
• NCBI ID: WP_019281902.1
• Uniprot ID: A0A289G9B4
• Organism: Vibrio anguillarum strain VIB43
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 558389..569270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK207_RS02850 (CK207_02850)	rpsP	559659..559907 (+)	249	WP_010319522.1	30S ribosomal protein S16	-
CK207_RS02855 (CK207_02855)	rimM	559937..560491 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
CK207_RS02860 (CK207_02860)	trmD	560519..561265 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CK207_RS02865 (CK207_02865)	rplS	561307..561660 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
CK207_RS02870 (CK207_02870)	yacG	561730..561927 (-)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
CK207_RS02875 (CK207_02875)	zapD	562017..562757 (-)	741	WP_019281903.1	cell division protein ZapD	-
CK207_RS02880 (CK207_02880)	coaE	562790..563398 (-)	609	WP_013857688.1	dephospho-CoA kinase	-
CK207_RS02885 (CK207_02885)	pilD	563389..564270 (-)	882	WP_019281902.1	A24 family peptidase	Machinery gene
CK207_RS02890 (CK207_02890)	pilC	564309..565535 (-)	1227	WP_069212069.1	type II secretion system F family protein	Machinery gene
CK207_RS02895 (CK207_02895)	pilB	565578..567266 (-)	1689	WP_029388146.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CK207_RS02900 (CK207_02900)	-	567272..567706 (-)	435	WP_050934217.1	pilin	-
CK207_RS02905 (CK207_02905)	nadC	567962..568849 (-)	888	WP_019281900.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32904.20 Da
• Isoelectric Point: 7.2157

>NTDB_id=244598 CK207_RS02885 WP_019281902.1 563389..564270(-) (pilD) [Vibrio anguillarum strain VIB43]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSLPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=244598 CK207_RS02885 WP_019281902.1 563389..564270(-) (pilD) [Vibrio anguillarum strain VIB43]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTCTCCCCCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGTCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTATTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A289G9B4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	77.431	98.294	0.761
pilD	Vibrio campbellii strain DS40M4	76.125	98.635	0.751
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461