Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SH_RS12710 Genome accession   NC_007168
Coordinates   2631535..2632047 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus JCSC1435     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2626535..2637047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH_RS12680 - 2626662..2627976 (+) 1315 Protein_2522 ISL3 family transposase -
  SH_RS12685 (SH2622) - 2628105..2628353 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  SH_RS12690 - 2628531..2629280 (-) 750 Protein_2524 amidohydrolase family protein -
  SH_RS12695 (SH2624) - 2629496..2629753 (+) 258 WP_011276864.1 hypothetical protein -
  SH_RS13070 (SH2625) - 2629956..2631026 (+) 1071 WP_011276865.1 Ltp family lipoprotein -
  SH_RS12705 (SH2626) rpsR 2631245..2631487 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  SH_RS12710 (SH2627) ssbA 2631535..2632047 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  SH_RS12715 (SH2628) rpsF 2632069..2632365 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  SH_RS12720 (SH2629) - 2632656..2633462 (+) 807 WP_011276868.1 glycoside hydrolase family 25 protein -
  SH_RS12725 (SH2630) - 2633528..2633719 (+) 192 WP_011276869.1 hypothetical protein -
  SH_RS12730 (SH2631) ychF 2633861..2634958 (-) 1098 WP_011276870.1 redox-regulated ATPase YchF -
  SH_RS12735 (SH2632) - 2634970..2635173 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  SH_RS12740 (SH2633) - 2635195..2636076 (-) 882 WP_011276872.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=24424 SH_RS12710 WP_011276866.1 2631535..2632047(-) (ssbA) [Staphylococcus haemolyticus JCSC1435]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=24424 SH_RS12710 WP_011276866.1 2631535..2632047(-) (ssbA) [Staphylococcus haemolyticus JCSC1435]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment