Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Aba10324_RS13925 Genome accession   NZ_CP023022
Coordinates   2879729..2880139 (+) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10324     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2874729..2885139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba10324_RS13910 (Aba10324_13915) - 2875718..2878024 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  Aba10324_RS13915 (Aba10324_13920) - 2878069..2878842 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  Aba10324_RS13920 (Aba10324_13925) mazG 2878954..2879760 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  Aba10324_RS13925 (Aba10324_13930) comEA 2879729..2880139 (+) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  Aba10324_RS13930 (Aba10324_13935) pcnB 2880264..2881727 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  Aba10324_RS13935 (Aba10324_13940) folK 2881724..2882206 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  Aba10324_RS13940 (Aba10324_13945) panB 2882252..2883061 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  Aba10324_RS13945 (Aba10324_13950) panC 2883065..2883913 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  Aba10324_RS13950 (Aba10324_13955) rapZ 2883936..2884787 (+) 852 WP_000821671.1 RNase adapter RapZ -
  Aba10324_RS13955 (Aba10324_13960) - 2884784..2885053 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=244192 Aba10324_RS13925 WP_002036702.1 2879729..2880139(+) (comEA) [Acinetobacter baumannii strain 10324]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=244192 Aba10324_RS13925 WP_002036702.1 2879729..2880139(+) (comEA) [Acinetobacter baumannii strain 10324]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375

Multiple sequence alignment