Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKF48_RS10920 Genome accession   NZ_CP022983
Coordinates   2104919..2105431 (+) Length   170 a.a.
NCBI ID   WP_095371344.1    Uniprot ID   -
Organism   Cytobacillus kochii strain BDGP4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2099919..2110431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS10890 (CKF48_10885) - 2099987..2100841 (+) 855 WP_095371338.1 ParB/RepB/Spo0J family partition protein -
  CKF48_RS10895 (CKF48_10890) - 2100904..2101605 (+) 702 WP_095371339.1 DUF554 domain-containing protein -
  CKF48_RS10900 (CKF48_10895) yyaC 2101910..2102527 (-) 618 WP_095371340.1 spore protease YyaC -
  CKF48_RS10905 (CKF48_10900) - 2102734..2102925 (+) 192 WP_180317033.1 DUF951 domain-containing protein -
  CKF48_RS10910 (CKF48_10905) ychF 2103233..2104333 (+) 1101 WP_095371342.1 redox-regulated ATPase YchF -
  CKF48_RS10915 (CKF48_10910) rpsF 2104594..2104881 (+) 288 WP_095371343.1 30S ribosomal protein S6 -
  CKF48_RS10920 (CKF48_10915) ssbA 2104919..2105431 (+) 513 WP_095371344.1 single-stranded DNA-binding protein Machinery gene
  CKF48_RS10925 (CKF48_10920) rpsR 2105477..2105716 (+) 240 WP_095371345.1 30S ribosomal protein S18 -
  CKF48_RS10935 (CKF48_10930) - 2106560..2107048 (+) 489 WP_233435335.1 ArsR/SmtB family transcription factor -
  CKF48_RS10940 (CKF48_10935) - 2107049..2108320 (+) 1272 WP_095371347.1 MFS transporter -
  CKF48_RS10945 (CKF48_10940) - 2108534..2109478 (+) 945 WP_095371348.1 YybS family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18956.63 Da        Isoelectric Point: 4.9622

>NTDB_id=243819 CKF48_RS10920 WP_095371344.1 2104919..2105431(+) (ssbA) [Cytobacillus kochii strain BDGP4]
MMNRVVLVGRLTKDPELRYTPNGVAVATFTLAVNRTFTNQNGDREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVQAESVQFLEPRNAAGSQGGSNQYGGQRDDYSYGGNNNQNQRPYDNNRSNQGQTRVDQDPFANNGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=243819 CKF48_RS10920 WP_095371344.1 2104919..2105431(+) (ssbA) [Cytobacillus kochii strain BDGP4]
ATGATGAATCGTGTAGTTCTAGTGGGGCGTTTAACGAAAGACCCAGAATTACGTTATACACCGAATGGAGTAGCAGTGGC
TACTTTTACTCTTGCTGTGAATCGTACATTTACGAATCAAAATGGAGACAGAGAAGCGGATTTCATTAATTGCGTTGTTT
GGAGAAAGCCTGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGAAGCCTAGCTGGTGTCGATGGACGCTTGCAAACACGT
AATTACGAAGGACAAGATGGCAAACGTGTATATGTGACTGAAGTTCAGGCAGAAAGCGTACAGTTTCTTGAACCAAGAAA
TGCTGCAGGCTCACAAGGTGGCTCGAATCAATATGGTGGCCAGAGAGATGATTATTCTTATGGTGGCAACAATAATCAGA
ATCAACGACCATATGATAATAACCGCAGCAACCAAGGCCAAACTCGTGTAGATCAAGATCCATTCGCTAATAACGGTCAA
ATCGATATTTCCGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.556

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.427

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.353

0.382

Multiple sequence alignment