Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CJ010_RS20560 Genome accession   NZ_CP022958
Coordinates   4451826..4453205 (-) Length   459 a.a.
NCBI ID   WP_141019778.1    Uniprot ID   A0A4Y6KWJ3
Organism   Azoarcus sp. DD4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4446826..4458205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ010_RS20525 (CJ010_20470) - 4447334..4448236 (-) 903 WP_141019775.1 ABC transporter ATP-binding protein -
  CJ010_RS20530 (CJ010_20475) - 4448239..4449078 (-) 840 WP_205754830.1 hypothetical protein -
  CJ010_RS20535 (CJ010_20480) - 4449081..4449890 (-) 810 WP_240794429.1 hypothetical protein -
  CJ010_RS20540 - 4450065..4450520 (-) 456 WP_141019776.1 hypothetical protein -
  CJ010_RS25745 - 4450631..4450718 (-) 88 Protein_4059 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CJ010_RS25750 - 4451063..4451275 (-) 213 WP_371415675.1 DUF86 domain-containing protein -
  CJ010_RS20555 (CJ010_20495) - 4451387..4451584 (-) 198 WP_205754831.1 nucleotidyltransferase family protein -
  CJ010_RS20560 (CJ010_20500) pilR 4451826..4453205 (-) 1380 WP_141019778.1 sigma-54 dependent transcriptional regulator Regulator
  CJ010_RS20565 (CJ010_20505) - 4453202..4454746 (-) 1545 WP_240794431.1 nitrogen regulation protein NR(II) -
  CJ010_RS20570 (CJ010_20510) - 4454760..4455023 (-) 264 WP_141019780.1 PP0621 family protein -
  CJ010_RS20575 (CJ010_20515) - 4455085..4456242 (-) 1158 WP_141019781.1 pyridoxal phosphate-dependent aminotransferase -
  CJ010_RS20580 (CJ010_20520) mtnA 4456394..4457473 (+) 1080 WP_141019782.1 S-methyl-5-thioribose-1-phosphate isomerase -
  CJ010_RS20585 (CJ010_20525) - 4457470..4458147 (+) 678 WP_141019783.1 class II aldolase/adducin family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50490.68 Da        Isoelectric Point: 5.5926

>NTDB_id=243725 CJ010_RS20560 WP_141019778.1 4451826..4453205(-) (pilR) [Azoarcus sp. DD4]
MSQIERRTRPSSSEVLVVDDEEDIRELIALSLLRLGLACDTAGSVAEARALLDSRRYRLCLTDMRLPDGDGLELVETIQA
RYPGLPVAVITAFGSIDTAIRALKLGAFDFVTKPVELKALRELVTHALRLDAKAEPAEASNGRRLIGSSAALAQLRVQIA
KLARNQAPVFIHGESGTGKEVIANLIHAQGARAGGPFVPVNCGAISPELMESEFFGHRKGSFTGANTDKEGLFQAANGGT
LFLDEVGELPLAMQVKLLRAIQERAVRPVGAHAEVTVDVRILSASHRDLAQLVAEGKFRQDLFFRINVITLRVPPLRERI
EDIPELATHILRRLAEREGSAPRRLSAAAIARLQQYAFPGNVRELENLLERACALCDGDEIGMDDIELYPTEGITQSQIA
FDPNREPAADDCDDDGGDDERIRVLRALDETRWNRSAAARKLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=243725 CJ010_RS20560 WP_141019778.1 4451826..4453205(-) (pilR) [Azoarcus sp. DD4]
ATGAGCCAGATCGAACGCCGTACCCGCCCCAGTTCGAGCGAAGTGCTGGTGGTGGACGATGAAGAGGACATCCGCGAACT
GATCGCGCTGTCGCTGCTCAGGCTGGGGCTGGCCTGCGACACCGCCGGCTCGGTGGCCGAGGCGAGGGCGCTGCTGGACA
GCCGCCGCTACCGCCTGTGCCTGACCGACATGCGTCTGCCCGACGGCGACGGCCTCGAACTCGTCGAGACCATACAGGCA
CGCTACCCCGGCCTGCCGGTGGCGGTAATCACCGCCTTCGGCAGCATCGACACCGCGATCCGCGCGCTCAAGCTCGGCGC
CTTCGACTTCGTCACCAAACCGGTGGAGCTGAAGGCCCTGCGCGAACTCGTGACCCACGCGCTGCGGCTCGACGCCAAGG
CGGAGCCGGCCGAAGCATCGAACGGCCGCCGGCTCATCGGCAGCTCGGCGGCGCTGGCCCAGTTGCGGGTGCAGATCGCC
AAGCTGGCGCGCAACCAGGCGCCGGTCTTCATCCACGGCGAATCCGGCACCGGCAAGGAAGTGATCGCCAACCTCATTCA
CGCGCAGGGCGCGCGCGCCGGCGGCCCTTTCGTGCCGGTGAATTGCGGCGCGATCTCGCCGGAGCTGATGGAAAGCGAAT
TCTTCGGCCATCGCAAGGGCAGTTTCACCGGCGCCAACACCGACAAGGAAGGCCTCTTCCAGGCGGCGAACGGCGGCACG
CTCTTCCTGGACGAAGTGGGCGAACTGCCGCTCGCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAGGGCGGTGCG
CCCGGTCGGTGCCCATGCCGAGGTCACGGTCGACGTGCGCATCCTCTCGGCCTCGCACCGCGACCTCGCCCAACTCGTGG
CCGAAGGCAAGTTCCGCCAGGATCTGTTCTTCCGCATCAACGTCATCACCCTGCGGGTGCCGCCGCTGCGCGAACGCATC
GAGGACATTCCCGAGCTCGCCACCCACATCCTGCGCCGCCTGGCCGAACGCGAGGGCAGTGCGCCACGGCGGCTGTCGGC
CGCGGCCATCGCCCGCCTGCAGCAATATGCCTTCCCCGGCAACGTGCGCGAGCTCGAAAACCTGCTGGAGCGCGCCTGCG
CGCTGTGCGACGGGGATGAGATCGGCATGGACGACATCGAGCTCTATCCCACCGAAGGCATCACCCAGTCGCAGATCGCG
TTCGACCCGAACCGGGAGCCCGCAGCGGACGATTGCGACGATGACGGCGGCGACGACGAGCGCATCCGCGTCCTGCGGGC
GCTGGACGAAACCCGCTGGAACCGCTCGGCGGCGGCGCGCAAGCTGGGCATGACGCTGCGGCAACTGCGCTACCGCCTGC
AGAAGTGGGGCATGGAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-456)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6KWJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.222

98.039

0.59
  pilR Acinetobacter baumannii strain A118

49.02

100

0.49

Multiple sequence alignment