Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CJZ72_RS04965 | Genome accession | NZ_CP022930 |
| Coordinates | 1031091..1031603 (+) | Length | 170 a.a. |
| NCBI ID | WP_005875808.1 | Uniprot ID | A0A4U4EBS1 |
| Organism | Enterococcus durans strain BDGP3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1026091..1036603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJZ72_RS04955 (CJZ72_04950) | gyrA | 1027920..1030421 (+) | 2502 | WP_095443665.1 | DNA gyrase subunit A | - |
| CJZ72_RS04960 (CJZ72_04955) | rpsF | 1030742..1031041 (+) | 300 | WP_005875806.1 | 30S ribosomal protein S6 | - |
| CJZ72_RS04965 (CJZ72_04960) | ssb | 1031091..1031603 (+) | 513 | WP_005875808.1 | single-stranded DNA-binding protein | Machinery gene |
| CJZ72_RS04970 (CJZ72_04965) | rpsR | 1031629..1031865 (+) | 237 | WP_005875810.1 | 30S ribosomal protein S18 | - |
| CJZ72_RS04975 (CJZ72_04970) | - | 1032114..1034087 (+) | 1974 | WP_081133665.1 | DHH family phosphoesterase | - |
| CJZ72_RS04980 (CJZ72_04975) | rplI | 1034093..1034545 (+) | 453 | WP_005875813.1 | 50S ribosomal protein L9 | - |
| CJZ72_RS04995 (CJZ72_04985) | dnaB | 1035172..1036539 (+) | 1368 | WP_005875816.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18598.09 Da Isoelectric Point: 4.6856
>NTDB_id=243535 CJZ72_RS04965 WP_005875808.1 1031091..1031603(+) (ssb) [Enterococcus durans strain BDGP3]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSGGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSGGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=243535 CJZ72_RS04965 WP_005875808.1 1031091..1031603(+) (ssb) [Enterococcus durans strain BDGP3]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGGCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGGCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.819 |
100 |
0.612 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.983 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
62.353 |
0.376 |