Detailed information NTG0243282

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: CGP99_RS08410
• Genome accession: NZ_CP022906
• Coordinates: 1638340..1638786 (-)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 546
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1636483..1637655	1638340..1638786	flank	685

Gene organization within MGE regions

Location: 1636483..1638786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGP99_RS08395 (CGP99_01521)	-	1636483..1637655 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
CGP99_RS08400 (CGP99_01522)	comGF	1637639..1638136 (-)	498	WP_240316779.1	competence type IV pilus minor pilin ComGF	Machinery gene
CGP99_RS08405 (CGP99_01523)	comGE	1638054..1638353 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
CGP99_RS08410 (CGP99_01524)	comGD	1638340..1638786 (-)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=243282 CGP99_RS08410 WP_001790850.1 1638340..1638786(-) (comGD) [Staphylococcus aureus strain 546]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=243282 CGP99_RS08410 WP_001790850.1 1638340..1638786(-) (comGD) [Staphylococcus aureus strain 546]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993