Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ssp1_RS04005 Genome accession   NZ_CP022881
Coordinates   829306..829683 (+) Length   125 a.a.
NCBI ID   WP_075778722.1    Uniprot ID   -
Organism   Staphylococcus sp. M0911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 824306..834683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS03975 (Ssp1_08060) atpD 824549..825961 (+) 1413 WP_075778725.1 F0F1 ATP synthase subunit beta -
  ssp1_RS03980 (Ssp1_08070) - 825981..826385 (+) 405 WP_002451652.1 F0F1 ATP synthase subunit epsilon -
  ssp1_RS03985 (Ssp1_08080) - 826537..826770 (+) 234 WP_002451651.1 DUF1146 family protein -
  ssp1_RS03990 (Ssp1_08090) murA 826882..828147 (+) 1266 WP_002466773.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ssp1_RS03995 (Ssp1_08100) fabZ 828191..828631 (+) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ssp1_RS04000 (Ssp1_08110) - 828678..829118 (-) 441 WP_002451648.1 YwpF-like family protein -
  ssp1_RS04005 (Ssp1_08120) ssb 829306..829683 (+) 378 WP_075778722.1 single-stranded DNA-binding protein Machinery gene
  ssp1_RS04010 (Ssp1_08130) tenA 830190..830879 (+) 690 Protein_797 thiaminase II -
  ssp1_RS04015 (Ssp1_08140) thiD 830872..831693 (+) 822 WP_075778721.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ssp1_RS04020 (Ssp1_08150) thiM 831686..832477 (+) 792 WP_075778720.1 hydroxyethylthiazole kinase -
  ssp1_RS04025 (Ssp1_08160) thiE 832478..833119 (+) 642 WP_075778719.1 thiamine phosphate synthase -
  ssp1_RS04030 (Ssp1_08170) yidC 833207..834076 (+) 870 WP_002451641.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14338.18 Da        Isoelectric Point: 6.9038

>NTDB_id=242464 ssp1_RS04005 WP_075778722.1 829306..829683(+) (ssb) [Staphylococcus sp. M0911]
MLNKIVLVGRLTKDAQIYEKEEGSKVATFCVATERNYKDQNNDIACDYLYCKAFGKTATNIEKFTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNEYNEAQNECFI

Nucleotide


Download         Length: 378 bp        

>NTDB_id=242464 ssp1_RS04005 WP_075778722.1 829306..829683(+) (ssb) [Staphylococcus sp. M0911]
ATGTTAAATAAAATAGTTTTAGTTGGTAGACTTACAAAGGATGCCCAAATTTATGAAAAGGAGGAAGGTAGTAAAGTAGC
AACATTTTGCGTTGCTACGGAAAGAAATTATAAAGATCAGAATAATGATATCGCATGCGATTATCTATATTGCAAAGCCT
TTGGGAAAACAGCTACGAATATTGAAAAGTTTACATCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGATCACGT
AAGTATGAAAAAGATAATCAGACACATTTTGTAACTGAAGTTTATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAATGAATATAATGAAGCACAAAATGAATGCTTCATATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.316

91.2

0.696
  ssb Staphylococcus aureus MW2

75.439

91.2

0.688
  ssb Latilactobacillus sakei subsp. sakei 23K

35.821

100

0.384

Multiple sequence alignment