Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CJO35_RS07960 Genome accession   NZ_CP022874
Coordinates   1547187..1547648 (-) Length   153 a.a.
NCBI ID   WP_003181285.1    Uniprot ID   A0A1Y0YEG4
Organism   Bacillus sp. 1s-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542187..1552648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJO35_RS07940 (CJO35_07945) - 1542533..1543702 (-) 1170 WP_003181276.1 aminotransferase A -
  CJO35_RS21840 - 1543894..1544052 (-) 159 WP_016885792.1 hypothetical protein -
  CJO35_RS07945 (CJO35_07950) - 1544224..1544748 (+) 525 WP_003181280.1 RDD family protein -
  CJO35_RS07950 (CJO35_07955) - 1544845..1546164 (+) 1320 WP_003181282.1 MFS transporter -
  CJO35_RS07955 (CJO35_07960) - 1546238..1547155 (+) 918 WP_003181284.1 chemotaxis protein -
  CJO35_RS07960 (CJO35_07965) kre 1547187..1547648 (-) 462 WP_003181285.1 YkyB family protein Regulator
  CJO35_RS07965 (CJO35_07970) - 1547790..1549091 (-) 1302 WP_003181287.1 MFS transporter -
  CJO35_RS07970 (CJO35_07975) - 1549180..1549677 (-) 498 WP_003181289.1 L,D-transpeptidase family protein -
  CJO35_RS07980 (CJO35_07985) - 1549857..1550714 (-) 858 WP_003181293.1 metallophosphoesterase -
  CJO35_RS07985 (CJO35_07990) fadH 1550860..1551624 (+) 765 WP_003181295.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17600.40 Da        Isoelectric Point: 10.6730

>NTDB_id=242392 CJO35_RS07960 WP_003181285.1 1547187..1547648(-) (kre) [Bacillus sp. 1s-1]
MDDHNHTKELKPTVENLSKAIYTVNRHAKTATNPKYLYLLKKKALQKLLNEGKGKKVGLHFSKNPRFSQQQSDVLISLGD
YFFHMPPTKEDFANLPHLGTLNHSYRNPKAHMSLNIAKQLLQNYTGIKEKPLVTNRKRPASKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=242392 CJO35_RS07960 WP_003181285.1 1547187..1547648(-) (kre) [Bacillus sp. 1s-1]
ATGGACGACCATAATCATACGAAAGAATTAAAACCGACAGTTGAAAACCTTTCAAAAGCGATTTATACAGTTAACCGCCA
TGCGAAAACCGCGACTAATCCCAAATACCTGTATCTTCTGAAAAAGAAAGCTTTGCAAAAGCTGCTTAATGAAGGAAAAG
GTAAAAAGGTAGGCCTGCATTTTTCGAAAAATCCAAGATTCAGCCAGCAGCAGTCAGATGTGCTGATATCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACAAAAGAAGACTTCGCAAACCTTCCACACTTAGGTACATTAAATCATTCGTATCGGAA
CCCTAAAGCTCATATGTCCTTGAATATAGCGAAACAGCTTCTTCAAAACTACACGGGAATCAAAGAAAAACCGCTCGTCA
CAAACCGGAAGCGTCCAGCCTCAAAACCCGTCTTCAAGAAGCTTGGCGAAAGCTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

82.468

100

0.83

Multiple sequence alignment