Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CCZ37_RS17800 Genome accession   NZ_CP022742
Coordinates   874465..876516 (-) Length   683 a.a.
NCBI ID   WP_094501815.1    Uniprot ID   A0A223N3E6
Organism   Vibrio qinghaiensis strain Q67     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 869465..881516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS17785 (CCZ37_17720) clcA 870519..871916 (+) 1398 WP_094501809.1 H(+)/Cl(-) exchange transporter ClcA -
  CCZ37_RS17790 (CCZ37_17725) - 872065..873039 (+) 975 WP_094501811.1 TDT family transporter -
  CCZ37_RS17795 (CCZ37_17730) cqsA 873238..874419 (+) 1182 WP_094501813.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CCZ37_RS17800 (CCZ37_17735) cqsS 874465..876516 (-) 2052 WP_094501815.1 hybrid sensor histidine kinase/response regulator Regulator
  CCZ37_RS17805 (CCZ37_17740) - 876652..879693 (-) 3042 WP_094501817.1 SMC family ATPase -
  CCZ37_RS17810 (CCZ37_17745) - 879693..880835 (-) 1143 WP_094501819.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78356.68 Da        Isoelectric Point: 5.6280

>NTDB_id=242084 CCZ37_RS17800 WP_094501815.1 874465..876516(-) (cqsS) [Vibrio qinghaiensis strain Q67]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESIELRVICSVFFAGIIFRNSTPKHLQRYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVYETKVMLIQAAVALACAYFVTYGVMNAELRVVVEWPYVPIFLFTY
IFGNQFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPSSTASKSESYTLPSKDLELITGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHTVKPVIEEALHSFSYKRPEDRQAVTLDVVDDFNFLGSSTLLKYVLYNLLKN
AFYYKNNTMFHIHICMESKGNKPQITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMNAFGGDITCRSELG
EWTEFTLRFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESVLLREEFEFEFDLIFVDLQ
TLHETPDYLTKLEPKLHFTQAKICYLYDQNQRYALTMERHLTIYPIEKHKLLLDGSAIIDELLFEAEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRSSGMNDYILKPADKTLLLNKLSHLI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=242084 CCZ37_RS17800 WP_094501815.1 874465..876516(-) (cqsS) [Vibrio qinghaiensis strain Q67]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACTCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
TCTTTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGCATAGAGTTACGGGTGATTTGCTCAGTTTTCT
TTGCAGGTATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCGCTACTTACCCTACTATTACTTGTTTTCAATAGGA
TTTTGCCTGCCATTCTTCTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCATTCATGGCGTC
GATTTTCCTCCACATCCTGCTCGTCTACGAAACAAAAGTCATGCTGATTCAAGCCGCAGTTGCACTAGCATGTGCTTACT
TTGTGACTTATGGCGTAATGAACGCGGAACTGCGAGTGGTGGTGGAATGGCCGTATGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCAGTTCTATTTTCGTAACCAAATTGAACACGAAGCGAAGGTGTCGATTGCCAAGTCTTTTGGCGCAGG
GATTGCTCATGAAATGAGAAATCCATTAAGTGCGTTAAAGGCGTCAATTGAAGTAATGGGTTCAGTATTACCGAGCTCTA
CTGCATCTAAATCAGAATCTTATACGCTACCATCTAAAGATTTAGAGCTGATTACTGGGTTATTAAGAGATGCTGATGAA
GTCATTCGCTCTGGTAATGAGACCATTGATTTGCTGTTAACCTCGATTGATCAAAATAGGGTCTCAACCTCAACCTTTAA
AAAACATACTGTAAAACCTGTCATCGAAGAAGCATTACACAGTTTCTCTTATAAAAGACCAGAAGATCGGCAAGCGGTGA
CTCTCGATGTTGTGGATGATTTTAATTTTTTAGGCAGCAGTACTTTACTTAAATACGTTCTCTACAATCTGCTTAAAAAC
GCGTTTTATTATAAAAATAATACGATGTTCCATATCCATATCTGCATGGAGTCAAAGGGAAATAAGCCCCAAATTACAGT
GAAAGATAATGGTGTCGGTATTGAACCGCACTTACTGGACGATATTTTTAAAGACTTTTATACCTTTGGTAAGAATGGTA
GTTATGGGTTAGGTTTGCCTTTTTGCCGTAAAGTGATGAACGCCTTTGGGGGCGATATCACCTGCCGCTCTGAGTTAGGT
GAGTGGACAGAGTTTACCTTAAGGTTTCCTGAGTATGATTCGCAAGCCGTTGCTAATATTAAACTCGATCTAATGAAGGC
TAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTCAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAAC
TTAATGTATTAGAGCCTGAGAGCGTTTTGCTTCGCGAAGAGTTTGAGTTTGAATTTGATCTGATCTTTGTTGATCTGCAA
ACGTTGCATGAAACGCCAGATTACTTAACCAAACTAGAGCCTAAATTGCATTTTACCCAAGCAAAAATTTGCTATTTATA
TGACCAAAATCAGCGTTATGCGCTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGGTCGGCCATTATTGATGAACTACTCTTTGAAGCGGAAGAGCTTATTGCCGATAAGAATGTTATCCCGTTAAAACAA
TACGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTGCGTAGTTTCACCGCTCTGCTGCTAGAAAAGCA
AGGCTATGAAGTGTTGCAAGCGAGTGATGGGGAATTAGCGTTACAAATGTTGGCCAATAATTCAATTGATTTGGTATTAA
TGGATATTGAGATGCCGATTATGGATGGTATTTCGGCTACTTTATCTATTCGTTCATCCACCGCTTCTTATAGTAAAGTG
CCTATTATTGGTCATACGGGTGACAATAGCCCATCAACGATCGAAAAAATTCGCTCATCAGGAATGAATGATTACATTTT
GAAGCCAGCGGATAAGACGCTGTTGCTAAATAAGCTCAGTCACTTAATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)

Response regulator receiver domain (Response_reg)

(567-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223N3E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

55.344

100

0.553

Multiple sequence alignment