Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CCZ37_RS17795 Genome accession   NZ_CP022742
Coordinates   873238..874419 (+) Length   393 a.a.
NCBI ID   WP_094501813.1    Uniprot ID   A0A223N3E2
Organism   Vibrio qinghaiensis strain Q67     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 868238..879419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS17780 (CCZ37_17715) - 869051..870037 (-) 987 WP_010320211.1 GTP-binding protein -
  CCZ37_RS17785 (CCZ37_17720) clcA 870519..871916 (+) 1398 WP_094501809.1 H(+)/Cl(-) exchange transporter ClcA -
  CCZ37_RS17790 (CCZ37_17725) - 872065..873039 (+) 975 WP_094501811.1 TDT family transporter -
  CCZ37_RS17795 (CCZ37_17730) cqsA 873238..874419 (+) 1182 WP_094501813.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CCZ37_RS17800 (CCZ37_17735) cqsS 874465..876516 (-) 2052 WP_094501815.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43568.54 Da        Isoelectric Point: 6.9546

>NTDB_id=242083 CCZ37_RS17795 WP_094501813.1 873238..874419(+) (cqsA) [Vibrio qinghaiensis strain Q67]
MNSRKWKHELPTSIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDDESKPSLETKFAEFLGFDSCLLSQSGWNANIALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIRPFMHNNCE
HLQKLIARHGPGIIVVDSIYSTIGTVAPLTDLVTIAKEWGCAILVDESHSLGTHGKKGAGLVNELGLTSEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADAKRSQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEDNQIFGAVFCRPATAKNKNIIRLSLNSDVTDSQIDTILTVCDKANKESSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=242083 CCZ37_RS17795 WP_094501813.1 873238..874419(+) (cqsA) [Vibrio qinghaiensis strain Q67]
ATGAATTCACGTAAGTGGAAACACGAACTACCGACTTCCATACAGTCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCCAACGGAAAACATCTTGTCCTGGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TGAGCTTGGCTGATCATCCATTAATTAAAGCACGGCTAAAAAATGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGACGAATCTAAACCTTCATTAGAAACGAAATTTGCAGAGTTTTTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCTGGTTGGAATGCGAACATTGCGCTGCTACAAGCTGTGTGTGGGCCACAAAGTAACGTCTACATTGACT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGTTATGCGAATGCCAATATTCGCCCATTCATGCACAATAATTGTGAA
CATTTGCAAAAACTGATCGCTCGGCACGGACCAGGGATCATCGTGGTTGATTCGATTTACAGCACTATCGGTACTGTTGC
ACCTCTCACTGATTTGGTCACCATAGCCAAAGAATGGGGATGCGCTATTTTAGTTGACGAATCCCATTCTCTCGGTACGC
ATGGTAAGAAAGGTGCAGGGCTTGTCAACGAATTAGGATTAACATCAGAAGTTGACTTTATTACGGCAAGTCTTGCGAAA
ACGTTCGCGTATCGCGCTGGCGCTATATGGGCGAATAATAATGTGAATCACTGCATCCCTTTTGTCGGCTATCCCGCTAT
TTTTAGTTCGACTATTTTGCCTTATGAAGTAGAAGCCTTAGAAGCAACGTTGGACATTATTAAATCAGCCGATGCTAAAA
GATCTCAGTTGCACCGCAATGCACACACACTGCGTCGCGGGCTAAATAGTATAGGGCTAAGTGTACGAAGCGAGTCCCAA
ATCATCGCGTTAGAAACAGGGGATGAGCGAAATACAGAAAAAGTTCGTGATTATTTAGAAGATAACCAAATATTTGGCGC
TGTTTTTTGCAGGCCAGCCACTGCAAAGAATAAAAATATTATTCGACTTTCGTTAAATAGTGATGTCACGGACTCACAAA
TTGACACCATATTAACTGTGTGCGACAAAGCGAACAAAGAGAGCAGTCTCTATTTCAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223N3E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.217

98.473

0.672

Multiple sequence alignment