Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CCZ37_RS11575 Genome accession   NZ_CP022741
Coordinates   2482369..2483001 (+) Length   210 a.a.
NCBI ID   WP_010318741.1    Uniprot ID   A0AAW8GZN2
Organism   Vibrio qinghaiensis strain Q67     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2477369..2488001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS11550 (CCZ37_11535) - 2477445..2479364 (+) 1920 WP_094500559.1 ABC transporter ATP-binding protein -
  CCZ37_RS11555 (CCZ37_11540) - 2479366..2479845 (+) 480 WP_010318745.1 TIGR02444 family protein -
  CCZ37_RS11560 (CCZ37_11545) - 2479902..2480909 (+) 1008 WP_094500560.1 hydrolase -
  CCZ37_RS11565 (CCZ37_11550) - 2480969..2481175 (+) 207 WP_010318743.1 YheU family protein -
  CCZ37_RS11570 (CCZ37_11555) - 2481258..2482127 (+) 870 WP_010318742.1 phosphoribulokinase -
  CCZ37_RS11575 (CCZ37_11560) crp 2482369..2483001 (+) 633 WP_010318741.1 cAMP-activated global transcriptional regulator CRP Regulator
  CCZ37_RS11580 (CCZ37_11565) - 2483105..2483899 (-) 795 WP_094500561.1 DUF1338 domain-containing protein -
  CCZ37_RS11585 (CCZ37_11570) astD 2483968..2485425 (-) 1458 WP_094500562.1 succinylglutamate-semialdehyde dehydrogenase -
  CCZ37_RS11590 (CCZ37_11575) astA 2485457..2486476 (-) 1020 WP_094500563.1 arginine N-succinyltransferase -
  CCZ37_RS11595 (CCZ37_11580) - 2486543..2487754 (-) 1212 WP_026027324.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23663.44 Da        Isoelectric Point: 7.8388

>NTDB_id=242071 CCZ37_RS11575 WP_010318741.1 2482369..2483001(+) (crp) [Vibrio qinghaiensis strain Q67]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=242071 CCZ37_RS11575 WP_010318741.1 2482369..2483001(+) (crp) [Vibrio qinghaiensis strain Q67]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATACCCATCGAA
AAGCACGTTGATTCATGCGGGCGAAAAAGCAGAGACGCTGTACTACATCGTCAAAGGCTCGGTAGCGGTATTGATTAAAG
ACGAAGAAGGTAAAGAGATGATCCTCTCTTACCTCAACCAAGGTGACTTTATCGGTGAGCTTGGTCTATTTGAAGAAGAC
CAAGAGCGTACTGCTTGGGTCCGTGCAAAATCACCTTGTGAAGTTGCGGAAATCTCTTTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTGTCTGCACAAATTTCTCGACGCCTGCAAGTCACCAGTCAAAAAGTAGGCG
ATTTAGCCTTCCTAGACGTGACGGGCCGTATTGCACAAACGCTACTTAACCTGGCGAAACAACCTGATGCAATGACGCAC
CCAGATGGCATGCAAATCAAAATCACCCGTCAAGAGATCGGCCAAATTGTAGGCTGTTCTCGTGAAACTGTGGGACGTAT
TTTGAAGATGCTCGAAGAGCAGAATTTAATTTCTGCCCACGGTAAAACTATCGTGGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment