Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABC_RS21255 Genome accession   NC_006582
Coordinates   4288801..4289286 (-) Length   161 a.a.
NCBI ID   WP_011248939.1    Uniprot ID   Q5WAH4
Organism   Shouchella clausii KSM-K16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4283801..4294286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC_RS21235 (ABC4102) rplI 4284982..4285425 (-) 444 WP_011248935.1 50S ribosomal protein L9 -
  ABC_RS21240 (ABC4103) - 4285422..4287392 (-) 1971 WP_011248936.1 DHH family phosphoesterase -
  ABC_RS21245 (ABC4104) - 4287422..4288324 (-) 903 WP_011248937.1 YybS family protein -
  ABC_RS21250 (ABC4105) rpsR 4288529..4288762 (-) 234 WP_011248938.1 30S ribosomal protein S18 -
  ABC_RS21255 (ABC4106) ssbA 4288801..4289286 (-) 486 WP_011248939.1 single-stranded DNA-binding protein Machinery gene
  ABC_RS21260 (ABC4107) rpsF 4289357..4289644 (-) 288 WP_011248940.1 30S ribosomal protein S6 -
  ABC_RS21265 (ABC4108) ychF 4289959..4291059 (-) 1101 WP_011248941.1 redox-regulated ATPase YchF -
  ABC_RS21270 - 4291128..4291322 (-) 195 WP_035205683.1 DUF951 domain-containing protein -
  ABC_RS21275 (ABC4109) - 4291386..4292414 (-) 1029 WP_011248942.1 membrane protein -
  ABC_RS21280 (ABC4110) yyaC 4292500..4293132 (+) 633 WP_011248943.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17633.18 Da        Isoelectric Point: 4.6010

>NTDB_id=24197 ABC_RS21255 WP_011248939.1 4288801..4289286(-) (ssbA) [Shouchella clausii KSM-K16]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGRRVFVTEIVAESVQFLEPRNSQNQSSGNNPGFDQYGAGNQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=24197 ABC_RS21255 WP_011248939.1 4288801..4289286(-) (ssbA) [Shouchella clausii KSM-K16]
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAACGGTGTAGCTGTAGC
CAATTTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAAGGAGAACGAGAAGCTGACTTCATTAACTGTGTTGTCT
GGCGCAAACCGGCTGAGAACGTCGCCAATTTCCTTAAAAAAGGGAGCCTTGCAGGAGTCGACGGCCGTGTGCAAACGCGA
AGCTATGACAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAATCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
CAGTCAAAACCAATCCTCTGGGAATAATCCTGGTTTTGATCAGTACGGCGCTGGCAACCAAGGTTCTGGCAACCAAACTG
GTGGCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGACGATGATCTTCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WAH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.714
  ssb Latilactobacillus sakei subsp. sakei 23K

55.814

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.839

0.398

Multiple sequence alignment