Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LBS_RS04480 Genome accession   NZ_CP022709
Coordinates   848228..849505 (-) Length   425 a.a.
NCBI ID   WP_094365791.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 843228..854505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS04475 (LBS_04475) - 846493..848202 (-) 1710 WP_011374954.1 proline--tRNA ligase -
  LBS_RS04480 (LBS_04480) eeP 848228..849505 (-) 1278 WP_094365791.1 RIP metalloprotease RseP Regulator
  LBS_RS04485 (LBS_04485) - 849712..850500 (-) 789 WP_016265347.1 phosphatidate cytidylyltransferase -
  LBS_RS04490 (LBS_04490) - 850531..851286 (-) 756 WP_085391480.1 isoprenyl transferase -
  LBS_RS04495 (LBS_04495) - 851454..854201 (+) 2748 WP_094365792.1 YhgE/Pip domain-containing protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46635.35 Da        Isoelectric Point: 9.7746

>NTDB_id=241792 LBS_RS04480 WP_094365791.1 848228..849505(-) (eeP) [Latilactobacillus sakei strain WiKim0063]
MAAIIAFIIIFGILVVVHEFGHFYMAKRSGILVREFSVGMGPKLFATRKNGTTYTIRWLPLGGYVRMAGMADDESEIEAG
TQATLILDEQGRVQQINTSDKVTTLNGVPFQIAKTDLQKELWVEGYEGGDESEMKRYPVLHDATIIEADGTEVQIAPVDV
QFQSATLINRMLTNFAGPFNNFILAILAFILFAFLSGGVPQQSNQIGTVQKNSAAQKAGLKANDRLLKVDNKKVASFTDF
SAIISEHPNETVAVRVQRGATEKTIKVTPKAVKVANQKEKVGQVGVTQKVKMDHSLKAKISYGFTQAWSIASQIFKILGS
FLTGGFSLDKLSGPVGMYSMTTQFTQQGFNALVYFLAFLSLNLGIMNLIPIPALDGGKLVLNIIEAIRRKPISPEKEGIV
TLIGVGIMVLLMVLVTWNDIQRFFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=241792 LBS_RS04480 WP_094365791.1 848228..849505(-) (eeP) [Latilactobacillus sakei strain WiKim0063]
TTGGCTGCAATTATTGCGTTTATCATCATCTTTGGTATTTTAGTAGTCGTTCATGAATTTGGGCATTTCTACATGGCTAA
GCGCTCAGGCATTTTGGTGCGTGAGTTTTCTGTCGGCATGGGGCCTAAATTATTTGCAACTCGCAAAAACGGCACAACTT
ACACCATCCGGTGGTTACCATTAGGTGGTTACGTTCGAATGGCGGGAATGGCCGACGATGAATCTGAAATTGAAGCTGGC
ACACAAGCAACTTTAATTTTGGACGAACAAGGACGCGTTCAACAGATTAATACAAGTGACAAGGTCACCACGTTAAACGG
GGTGCCTTTCCAAATTGCTAAAACAGATTTGCAAAAGGAATTGTGGGTTGAAGGTTACGAAGGCGGCGACGAATCAGAAA
TGAAACGTTATCCCGTCTTACATGATGCGACGATTATCGAAGCGGACGGAACGGAAGTGCAAATCGCACCCGTGGATGTC
CAATTCCAATCAGCAACGTTGATTAATCGGATGTTAACGAACTTTGCCGGACCATTTAATAACTTCATCCTCGCAATTCT
AGCCTTTATCCTCTTCGCTTTTCTAAGCGGGGGTGTGCCACAGCAATCCAATCAAATTGGCACGGTGCAAAAGAATTCTG
CTGCTCAAAAGGCAGGCTTAAAAGCCAACGATCGTCTCTTGAAAGTTGATAACAAAAAAGTAGCAAGCTTCACTGACTTT
AGTGCGATTATTTCAGAACACCCTAACGAAACTGTTGCGGTGCGCGTTCAACGGGGCGCAACTGAAAAGACAATCAAGGT
GACACCCAAGGCTGTCAAAGTGGCTAACCAAAAAGAAAAGGTTGGTCAAGTAGGGGTCACACAAAAAGTCAAAATGGATC
ATAGCCTAAAGGCCAAGATTTCTTACGGCTTTACACAAGCTTGGTCAATTGCCAGTCAGATTTTCAAGATCCTCGGGTCA
TTTTTAACCGGTGGGTTCTCACTAGATAAATTATCGGGGCCGGTCGGCATGTATTCAATGACGACCCAATTTACCCAACA
AGGCTTTAATGCGTTAGTTTATTTCTTAGCATTCTTATCACTTAATTTGGGGATTATGAATCTAATTCCGATTCCGGCAT
TAGATGGTGGTAAGTTAGTCTTGAACATTATTGAAGCGATTCGTCGCAAACCAATTTCACCTGAAAAAGAAGGCATCGTG
ACATTAATCGGTGTCGGTATTATGGTGTTATTAATGGTCTTAGTCACGTGGAACGATATACAACGATTTTTCTTTTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-258)

Peptidase family M50 (Peptidase_M50)

(6-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48.148

100

0.489
  eeP Streptococcus thermophilus LMG 18311

48.148

100

0.489

Multiple sequence alignment