Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   C2U19_RS00155 Genome accession   NZ_CP028483
Coordinates   29807..30397 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain E41-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 24807..35397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U19_RS28350 ysdE 25892..25966 (+) 75 WP_211180519.1 protein YsdE -
  C2U19_RS00135 (C2U19_00135) ivbL 26211..26309 (+) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  C2U19_RS00140 (C2U19_00140) ilvB 26415..28103 (+) 1689 WP_000168502.1 acetolactate synthase large subunit -
  C2U19_RS00145 (C2U19_00145) ilvN 28107..28397 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  C2U19_RS28870 (C2U19_00150) - 28463..29323 (-) 861 Protein_30 DUF6708 domain-containing protein -
  C2U19_RS00155 (C2U19_00155) letA 29807..30397 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  C2U19_RS00160 (C2U19_00160) uhpB 30397..31899 (+) 1503 WP_110204442.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  C2U19_RS00165 (C2U19_00165) uhpC 31909..33228 (+) 1320 WP_001296565.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  C2U19_RS00170 (C2U19_00170) uhpT 33366..34757 (+) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=241633 C2U19_RS00155 WP_000633668.1 29807..30397(+) (letA) [Escherichia coli strain E41-1]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=241633 C2U19_RS00155 WP_000633668.1 29807..30397(+) (letA) [Escherichia coli strain E41-1]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CACGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACTGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCTGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCAGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCGCCGAAAACAGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment