Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   CHF41_RS08970 Genome accession   NZ_CP022680
Coordinates   1863612..1864613 (-) Length   333 a.a.
NCBI ID   WP_162911963.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1858612..1869613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS08945 - 1859349..1859963 (-) 615 WP_119876946.1 DUF1349 domain-containing protein -
  CHF41_RS08950 - 1860029..1860394 (-) 366 WP_119876947.1 hypothetical protein -
  CHF41_RS08955 - 1860812..1861159 (-) 348 WP_119876948.1 hypothetical protein -
  CHF41_RS08960 - 1861195..1862511 (-) 1317 WP_119876949.1 glycosyltransferase family 4 protein -
  CHF41_RS08965 - 1862512..1863510 (-) 999 WP_119876950.1 glycosyltransferase family 4 protein -
  CHF41_RS08970 ccpA 1863612..1864613 (-) 1002 WP_162911963.1 catabolite control protein A Regulator
  CHF41_RS08975 - 1864913..1865995 (+) 1083 WP_119876952.1 M24 family metallopeptidase -
  CHF41_RS08980 - 1865988..1866512 (+) 525 WP_162911941.1 GNAT family N-acetyltransferase -
  CHF41_RS08985 - 1866613..1867449 (-) 837 WP_119876954.1 alpha/beta fold hydrolase -
  CHF41_RS08990 - 1867509..1868522 (-) 1014 WP_119876955.1 NADP-dependent oxidoreductase -
  CHF41_RS08995 - 1868719..1869138 (-) 420 WP_119876956.1 Rrf2 family transcriptional regulator -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36678.76 Da        Isoelectric Point: 5.1660

>NTDB_id=241591 CHF41_RS08970 WP_162911963.1 1863612..1864613(-) (ccpA) [Streptococcus respiraculi strain HTS25]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDESDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAKASKDAVDLLAKNNEKIAFVSGPLVDDINGKVRFAGYKEGLKENGLTFNEGLVFESKYKYEEGYALADRILNAG
ATAAYVAEDEIAAGLLNGIVDKGIKVPEDFEIITSDDSLVTKFTNPNLTSISQPLYDIGAIAMRMLTKIMHKEELDTREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=241591 CHF41_RS08970 WP_162911963.1 1863612..1864613(-) (ccpA) [Streptococcus respiraculi strain HTS25]
TTGAATACTGATGATACAGTCACCATTTATGACGTTGCTCGTGAAGCGGGTGTTTCAATGGCAACCGTTAGCCGAGTGGT
GAATGGTAATAAGAATGTAAAGGAAAACACGCGTAAAAAAGTATTAGAAGTGATTGACCGTTTGGACTATCGACCAAATG
CGGTGGCGCGTGGTCTCGCAAGTAAGAAGACAACAACAGTCGGCGTTGTGATTCCAAATATTGCCAATGCCTATTTTGCG
ACCTTGGCAAAAGGAATTGATGATATTGCAGACATGTACAAGTACAATATTGTTCTTGCAAACAGCGATGAAAGTGATGA
AAAAGAAATCAATGTGGTTAATACCTTGTTTTCAAAACAGGTGGACGGTATTATTTTCATGGGTTACCATTTGACAGATA
AAATCCGTGCAGAATTTTCTCGTTCTCGGACACCGATTGTACTTGCAGGAACGGTTGATTTGGAACATCAATTGCCAAGT
GTTAACATCGATTATGCAAAAGCGAGCAAGGATGCGGTAGATTTGTTAGCTAAAAACAATGAAAAGATTGCCTTTGTATC
TGGTCCCTTAGTAGATGACATCAATGGTAAAGTTCGTTTTGCGGGCTACAAAGAAGGCTTGAAAGAAAATGGCTTGACCT
TTAACGAGGGACTCGTCTTTGAATCGAAATATAAGTACGAAGAAGGCTATGCACTTGCGGACCGTATCTTGAATGCGGGA
GCGACAGCAGCTTATGTCGCAGAAGATGAAATTGCGGCAGGTTTGTTAAACGGGATTGTCGATAAGGGGATTAAGGTTCC
AGAAGACTTTGAGATTATCACGAGTGATGACTCACTAGTCACTAAATTTACTAATCCAAACTTGACTTCTATCAGCCAGC
CTTTGTACGACATCGGTGCGATTGCCATGCGAATGTTGACAAAAATCATGCACAAGGAAGAATTGGATACGCGTGAAGTC
ATCTTGAATCATGGTATTAAAGAACGTAAATCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

80.48

100

0.805

  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

100

0.79

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

99.399

0.574


Multiple sequence alignment