Detailed information NTG0241585

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: CHF41_RS07505
• Genome accession: NZ_CP022680
• Coordinates: 1537954..1539183 (-)
• Length: 409 a.a.
• NCBI ID: WP_119876693.1
• Uniprot ID: -
• Organism: Streptococcus respiraculi strain HTS25
• Function: require for competence development (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1536286..1537239	1537954..1539183	flank	715

Gene organization within MGE regions

Location: 1536286..1539183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHF41_RS07495	-	1536286..1537239 (-)	954	WP_119876374.1	IS30 family transposase	-
CHF41_RS07500	yihA	1537357..1537944 (-)	588	WP_119876692.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
CHF41_RS07505	clpX	1537954..1539183 (-)	1230	WP_119876693.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45655.25 Da
• Isoelectric Point: 4.6884

>NTDB_id=241585 CHF41_RS07505 WP_119876693.1 1537954..1539183(-) (clpX) [Streptococcus respiraculi strain HTS25]
MPKHHHPSELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLTILNHYVIGQDR
AKRALAVAVYNHYKRINFQDSREENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQLDTK
NILFIVGGAFDGIEEIVKQRMGEKIIGFGHNNRAIDETESYMQHIIADDIQKFGIIPELIGRLPVFAPLDQLTTEDLIRI
LTEPKNALVKQYQTLLSYDGVELDFDKEALEEIAKRAIERKTGARGLRSIIEETMLDVMFEVPSQDEVKRVRITKEAVDG
KAQPILETA

Nucleotide

• Length: 1230 bp

>NTDB_id=241585 CHF41_RS07505 WP_119876693.1 1537954..1539183(-) (clpX) [Streptococcus respiraculi strain HTS25]
ATGCCAAAACATCATCATCCATCAGAGCTTATTTACTGCTCATTTTGTGGAAAGAATCAAGAAGAAGTAAAGAAAATCAT
CGCAGGAAATAATGTCTTTATCTGTAATGAATGTGTGGAGTTAGCCCAAGAAATTATTCGTGAAGAATTAGCAGAAGAAG
TCTTGACAGACTTAGCTGACACCCCTAAACCGCAGGAGCTACTTACGATTTTAAACCACTATGTCATCGGACAAGACCGT
GCCAAACGTGCCCTAGCAGTAGCGGTTTACAACCATTACAAACGGATTAACTTTCAAGATAGTCGCGAAGAAAATGATGT
GGATTTGCAAAAGTCCAATATTCTCATGATTGGTCCGACCGGTTCTGGAAAGACCTTTCTTGCTCAAACATTGGCTAAAA
GTCTGAATGTTCCCTTTGCCATTGCGGACGCGACAGCCTTGACAGAAGCTGGTTATGTCGGAGAAGACGTTGAAAATATC
CTCTTAAAACTGCTCCAAGCGGCTGATTTTAATATTGACCGTGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
AATCGCTAAAAAAGGGGAAAACGTATCGATTACAAGAGATGTCTCAGGAGAGGGAGTACAGCAAGCCCTTCTAAAAATCA
TTGAGGGAACTGTGGCTAGTGTTCCACCACAAGGTGGACGCAAGCATCCGCAGCAGGAGATGATTCAGCTGGATACCAAA
AATATCCTCTTTATCGTAGGTGGAGCGTTTGACGGTATCGAAGAAATTGTCAAGCAGCGCATGGGAGAAAAAATCATCGG
TTTCGGACACAACAACCGTGCCATTGATGAAACAGAATCCTATATGCAGCACATTATCGCAGACGATATCCAAAAATTTG
GTATTATTCCTGAGTTGATCGGTCGCTTACCAGTCTTTGCTCCTCTTGATCAGTTGACGACAGAAGACCTGATTCGCATT
TTGACCGAGCCGAAAAATGCCCTTGTGAAACAGTATCAGACTCTATTGTCTTATGACGGTGTGGAGTTAGACTTTGACAA
AGAAGCTCTTGAAGAAATTGCCAAACGGGCAATTGAGCGCAAGACAGGCGCGCGCGGTCTTCGTTCGATTATCGAAGAAA
CTATGCTTGATGTCATGTTTGAAGTACCAAGCCAAGACGAGGTGAAGCGCGTTCGGATTACCAAAGAAGCAGTAGATGGA
AAGGCCCAGCCTATCTTAGAGACGGCATAA

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	84.461	97.555	0.824
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.463	98.289	0.565