Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CIB87_RS24220 Genome accession   NZ_CP022674
Coordinates   4671583..4671945 (-) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia megaterium strain SR7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4667124..4678313 4671583..4671945 within 0


Gene organization within MGE regions


Location: 4667124..4678313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIB87_RS24210 (CIB87_24140) - 4667124..4669754 (+) 2631 WP_114897011.1 DEAD/DEAH box helicase -
  CIB87_RS24215 (CIB87_24145) - 4670052..4671098 (+) 1047 WP_114897012.1 LysM peptidoglycan-binding domain-containing protein -
  CIB87_RS24220 (CIB87_24150) ssbB 4671583..4671945 (-) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  CIB87_RS24225 (CIB87_24155) - 4672042..4672479 (+) 438 WP_114897013.1 YwpF-like family protein -
  CIB87_RS24230 (CIB87_24160) - 4673003..4673425 (+) 423 WP_071269948.1 helix-turn-helix domain-containing protein -
  CIB87_RS24235 (CIB87_24165) fabZ 4673454..4673888 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CIB87_RS24240 (CIB87_24170) - 4673972..4674793 (-) 822 WP_114897014.1 flagellar hook-basal body protein -
  CIB87_RS24245 (CIB87_24175) - 4674817..4675641 (-) 825 WP_114897015.1 flagellar hook-basal body protein -
  CIB87_RS24250 (CIB87_24180) - 4675756..4676757 (-) 1002 WP_114897016.1 rod shape-determining protein -
  CIB87_RS24255 (CIB87_24185) spoIIID 4676944..4677207 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  CIB87_RS24260 (CIB87_24190) - 4677483..4678313 (-) 831 WP_028409695.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=241523 CIB87_RS24220 WP_028411997.1 4671583..4671945(-) (ssbB) [Priestia megaterium strain SR7]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=241523 CIB87_RS24220 WP_028411997.1 4671583..4671945(-) (ssbB) [Priestia megaterium strain SR7]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCGGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACTGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCCGATTCGTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508

Multiple sequence alignment